Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5989 and GFF5990 are separated by 13 nucleotides GFF5990 and GFF5991 are separated by 5 nucleotides
GFF5989 - RND efflux system, membrane fusion protein, at 43,047 to 44,291
GFF5989
GFF5990 - RND efflux system, inner membrane transporter, at 44,305 to 47,442
GFF5990
GFF5991 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 47,448 to 48,932
GFF5991
Position (kb) 44
45
46
47
48 Strain fitness (log2 ratio) -2
-1
0
1
2 at 43.398 kb on + strand, within GFF5989 at 43.398 kb on + strand, within GFF5989 at 43.398 kb on + strand, within GFF5989 at 43.398 kb on + strand, within GFF5989 at 43.399 kb on - strand, within GFF5989 at 43.980 kb on + strand, within GFF5989 at 43.980 kb on + strand, within GFF5989 at 43.980 kb on + strand, within GFF5989 at 43.980 kb on + strand, within GFF5989 at 43.980 kb on + strand, within GFF5989 at 43.981 kb on - strand, within GFF5989 at 43.981 kb on - strand, within GFF5989 at 44.249 kb on + strand at 44.250 kb on - strand at 44.773 kb on + strand, within GFF5990 at 44.774 kb on - strand, within GFF5990 at 44.774 kb on - strand, within GFF5990 at 44.774 kb on - strand, within GFF5990 at 45.130 kb on + strand, within GFF5990 at 45.373 kb on + strand, within GFF5990 at 45.373 kb on + strand, within GFF5990 at 45.374 kb on - strand, within GFF5990 at 45.564 kb on + strand, within GFF5990 at 45.565 kb on - strand, within GFF5990 at 45.565 kb on - strand, within GFF5990 at 45.937 kb on + strand, within GFF5990 at 45.938 kb on - strand, within GFF5990 at 45.938 kb on - strand, within GFF5990 at 46.094 kb on - strand, within GFF5990 at 46.094 kb on - strand, within GFF5990 at 46.123 kb on + strand, within GFF5990 at 46.561 kb on + strand, within GFF5990 at 46.604 kb on - strand, within GFF5990 at 46.604 kb on - strand, within GFF5990 at 46.721 kb on - strand, within GFF5990 at 46.744 kb on + strand, within GFF5990 at 46.859 kb on - strand, within GFF5990 at 46.879 kb on + strand, within GFF5990 at 46.879 kb on + strand, within GFF5990 at 46.880 kb on - strand, within GFF5990 at 46.963 kb on + strand, within GFF5990 at 47.065 kb on + strand, within GFF5990 at 47.066 kb on - strand, within GFF5990 at 47.456 kb on + strand at 47.848 kb on - strand, within GFF5991 at 47.874 kb on + strand, within GFF5991 at 47.931 kb on + strand, within GFF5991 at 47.931 kb on + strand, within GFF5991 at 47.931 kb on + strand, within GFF5991
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 43,398 + GFF5989 0.28 -0.3 43,398 + GFF5989 0.28 +0.0 43,398 + GFF5989 0.28 -0.5 43,398 + GFF5989 0.28 -0.3 43,399 - GFF5989 0.28 -0.5 43,980 + GFF5989 0.75 -0.8 43,980 + GFF5989 0.75 -0.3 43,980 + GFF5989 0.75 +1.6 43,980 + GFF5989 0.75 -1.2 43,980 + GFF5989 0.75 -0.2 43,981 - GFF5989 0.75 -0.4 43,981 - GFF5989 0.75 +0.0 44,249 + +1.0 44,250 - +0.3 44,773 + GFF5990 0.15 +0.2 44,774 - GFF5990 0.15 -0.5 44,774 - GFF5990 0.15 -0.2 44,774 - GFF5990 0.15 +2.2 45,130 + GFF5990 0.26 -1.8 45,373 + GFF5990 0.34 -0.5 45,373 + GFF5990 0.34 -1.5 45,374 - GFF5990 0.34 -0.8 45,564 + GFF5990 0.40 +1.6 45,565 - GFF5990 0.40 -0.6 45,565 - GFF5990 0.40 -0.3 45,937 + GFF5990 0.52 -0.4 45,938 - GFF5990 0.52 -0.4 45,938 - GFF5990 0.52 -1.3 46,094 - GFF5990 0.57 -0.5 46,094 - GFF5990 0.57 -0.5 46,123 + GFF5990 0.58 +0.0 46,561 + GFF5990 0.72 -0.0 46,604 - GFF5990 0.73 +0.6 46,604 - GFF5990 0.73 -0.2 46,721 - GFF5990 0.77 -0.4 46,744 + GFF5990 0.78 +0.0 46,859 - GFF5990 0.81 +0.5 46,879 + GFF5990 0.82 +0.5 46,879 + GFF5990 0.82 +0.6 46,880 - GFF5990 0.82 -0.4 46,963 + GFF5990 0.85 -0.1 47,065 + GFF5990 0.88 +0.2 47,066 - GFF5990 0.88 +0.4 47,456 + +0.7 47,848 - GFF5991 0.27 -0.4 47,874 + GFF5991 0.29 -1.0 47,931 + GFF5991 0.33 +1.4 47,931 + GFF5991 0.33 -0.3 47,931 + GFF5991 0.33 -0.5
Or see this region's nucleotide sequence