Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5979 and GFF5980 are separated by 1 nucleotides GFF5980 and GFF5981 are separated by 48 nucleotides GFF5981 and GFF5982 are separated by 91 nucleotides GFF5982 and GFF5983 are separated by 65 nucleotides
GFF5979 - Short-chain dehydrogenase/reductase SDR?, at 34,045 to 34,806
GFF5979
GFF5980 - Cyanate hydratase (EC 4.2.1.104), at 34,808 to 35,251
GFF5980
GFF5981 - COGs COG3558, at 35,300 to 35,713
GFF5981
GFF5982 - Transcriptional regulator, AcrR family, at 35,805 to 36,395
GFF5982
GFF5983 - Transcriptional regulator, LysR family, at 36,461 to 37,348
GFF5983
Position (kb) 35
36
37 Strain fitness (log2 ratio) -2
-1
0
1
2 at 34.812 kb on + strand at 34.812 kb on + strand at 34.812 kb on + strand at 34.813 kb on - strand at 34.813 kb on - strand at 34.813 kb on - strand at 34.821 kb on + strand at 34.822 kb on - strand at 34.965 kb on + strand, within GFF5980 at 34.966 kb on - strand, within GFF5980 at 34.984 kb on - strand, within GFF5980 at 34.984 kb on - strand, within GFF5980 at 34.993 kb on - strand, within GFF5980 at 35.037 kb on + strand, within GFF5980 at 35.037 kb on + strand, within GFF5980 at 35.038 kb on - strand, within GFF5980 at 35.038 kb on - strand, within GFF5980 at 35.038 kb on - strand, within GFF5980 at 35.601 kb on + strand, within GFF5981 at 35.602 kb on - strand, within GFF5981 at 35.713 kb on + strand at 35.793 kb on + strand at 35.794 kb on - strand at 35.865 kb on + strand, within GFF5982 at 35.865 kb on + strand, within GFF5982 at 35.866 kb on - strand, within GFF5982 at 35.866 kb on - strand, within GFF5982 at 35.866 kb on - strand, within GFF5982 at 35.866 kb on - strand, within GFF5982 at 36.427 kb on - strand at 36.812 kb on + strand, within GFF5983 at 36.813 kb on - strand, within GFF5983 at 36.813 kb on - strand, within GFF5983 at 36.971 kb on + strand, within GFF5983 at 36.972 kb on - strand, within GFF5983
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 34,812 + +0.6 34,812 + -1.9 34,812 + +0.8 34,813 - +0.1 34,813 - +0.8 34,813 - +0.9 34,821 + +0.3 34,822 - -0.5 34,965 + GFF5980 0.35 +1.4 34,966 - GFF5980 0.36 -2.2 34,984 - GFF5980 0.40 -0.5 34,984 - GFF5980 0.40 -0.2 34,993 - GFF5980 0.42 -0.5 35,037 + GFF5980 0.52 +0.5 35,037 + GFF5980 0.52 -1.0 35,038 - GFF5980 0.52 -0.4 35,038 - GFF5980 0.52 +0.5 35,038 - GFF5980 0.52 +0.1 35,601 + GFF5981 0.73 -1.0 35,602 - GFF5981 0.73 +0.6 35,713 + -0.6 35,793 + +1.0 35,794 - -0.1 35,865 + GFF5982 0.10 +0.1 35,865 + GFF5982 0.10 -0.5 35,866 - GFF5982 0.10 -1.7 35,866 - GFF5982 0.10 -0.5 35,866 - GFF5982 0.10 -0.5 35,866 - GFF5982 0.10 -0.5 36,427 - +0.4 36,812 + GFF5983 0.40 +1.2 36,813 - GFF5983 0.40 +0.8 36,813 - GFF5983 0.40 +0.2 36,971 + GFF5983 0.57 +0.1 36,972 - GFF5983 0.58 +1.9
Or see this region's nucleotide sequence