Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5960 and GFF5961 overlap by 4 nucleotides GFF5961 and GFF5962 are separated by 35 nucleotides GFF5962 and GFF5963 are separated by 85 nucleotides GFF5963 and GFF5964 are separated by 52 nucleotides GFF5964 and GFF5965 are separated by 12 nucleotides
GFF5960 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 16,105 to 16,719
GFF5960
GFF5961 - Acetyltransferase, at 16,716 to 17,210
GFF5961
GFF5962 - hypothetical protein, at 17,246 to 17,524
GFF5962
GFF5963 - Gfa-like protein, at 17,610 to 18,011
GFF5963
GFF5964 - Homoserine/homoserine lactone efflux protein, at 18,064 to 18,690
GFF5964
GFF5965 - hypothetical protein, at 18,703 to 18,912
GFF5965
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1 at 16.803 kb on + strand, within GFF5961 at 16.803 kb on + strand, within GFF5961 at 16.803 kb on + strand, within GFF5961 at 16.803 kb on + strand, within GFF5961 at 16.804 kb on - strand, within GFF5961 at 16.804 kb on - strand, within GFF5961 at 16.804 kb on - strand, within GFF5961 at 16.804 kb on - strand, within GFF5961 at 17.113 kb on - strand, within GFF5961 at 17.270 kb on + strand at 17.271 kb on - strand at 17.271 kb on - strand at 17.561 kb on - strand at 17.561 kb on - strand at 17.622 kb on + strand at 17.622 kb on + strand at 17.622 kb on + strand at 17.622 kb on + strand at 17.622 kb on + strand at 17.622 kb on + strand at 17.622 kb on + strand at 17.622 kb on + strand at 17.623 kb on - strand at 17.623 kb on - strand at 17.623 kb on - strand at 17.817 kb on + strand, within GFF5963 at 17.817 kb on + strand, within GFF5963 at 17.817 kb on + strand, within GFF5963 at 17.817 kb on + strand, within GFF5963 at 17.817 kb on + strand, within GFF5963 at 17.818 kb on - strand, within GFF5963 at 17.818 kb on - strand, within GFF5963 at 17.818 kb on - strand, within GFF5963 at 17.818 kb on - strand, within GFF5963 at 17.818 kb on - strand, within GFF5963 at 17.818 kb on - strand, within GFF5963 at 18.151 kb on + strand, within GFF5964 at 18.151 kb on + strand, within GFF5964 at 18.151 kb on + strand, within GFF5964 at 18.151 kb on + strand, within GFF5964 at 18.151 kb on + strand, within GFF5964 at 18.151 kb on + strand, within GFF5964 at 18.308 kb on - strand, within GFF5964 at 18.316 kb on + strand, within GFF5964 at 18.316 kb on + strand, within GFF5964 at 18.317 kb on - strand, within GFF5964 at 18.412 kb on + strand, within GFF5964 at 18.412 kb on + strand, within GFF5964 at 18.412 kb on + strand, within GFF5964 at 18.413 kb on - strand, within GFF5964 at 18.413 kb on - strand, within GFF5964 at 18.559 kb on + strand, within GFF5964 at 18.701 kb on - strand at 18.720 kb on + strand at 18.738 kb on - strand, within GFF5965 at 18.777 kb on - strand, within GFF5965 at 18.842 kb on + strand, within GFF5965 at 18.842 kb on + strand, within GFF5965 at 18.889 kb on + strand, within GFF5965 at 18.889 kb on + strand, within GFF5965
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 16,803 + GFF5961 0.18 -1.0 16,803 + GFF5961 0.18 +0.3 16,803 + GFF5961 0.18 -0.0 16,803 + GFF5961 0.18 -0.3 16,804 - GFF5961 0.18 +0.5 16,804 - GFF5961 0.18 +0.9 16,804 - GFF5961 0.18 -0.1 16,804 - GFF5961 0.18 +0.2 17,113 - GFF5961 0.80 -0.4 17,270 + +0.1 17,271 - +0.0 17,271 - -2.1 17,561 - -0.0 17,561 - -0.2 17,622 + -0.7 17,622 + +1.3 17,622 + -0.1 17,622 + +0.0 17,622 + +0.9 17,622 + -0.1 17,622 + -0.3 17,622 + -0.1 17,623 - -0.3 17,623 - +0.6 17,623 - +1.0 17,817 + GFF5963 0.51 +0.3 17,817 + GFF5963 0.51 +0.0 17,817 + GFF5963 0.51 +1.3 17,817 + GFF5963 0.51 -0.6 17,817 + GFF5963 0.51 +0.3 17,818 - GFF5963 0.52 -0.2 17,818 - GFF5963 0.52 -0.2 17,818 - GFF5963 0.52 +0.4 17,818 - GFF5963 0.52 -0.1 17,818 - GFF5963 0.52 +0.2 17,818 - GFF5963 0.52 +0.9 18,151 + GFF5964 0.14 -0.7 18,151 + GFF5964 0.14 -1.0 18,151 + GFF5964 0.14 -0.1 18,151 + GFF5964 0.14 -0.1 18,151 + GFF5964 0.14 +0.3 18,151 + GFF5964 0.14 +0.2 18,308 - GFF5964 0.39 +0.1 18,316 + GFF5964 0.40 +0.3 18,316 + GFF5964 0.40 -0.4 18,317 - GFF5964 0.40 -0.0 18,412 + GFF5964 0.56 -0.2 18,412 + GFF5964 0.56 -0.0 18,412 + GFF5964 0.56 -1.0 18,413 - GFF5964 0.56 -2.0 18,413 - GFF5964 0.56 -0.2 18,559 + GFF5964 0.79 +0.2 18,701 - +0.8 18,720 + -0.5 18,738 - GFF5965 0.17 -0.5 18,777 - GFF5965 0.35 +0.6 18,842 + GFF5965 0.66 +0.2 18,842 + GFF5965 0.66 +1.2 18,889 + GFF5965 0.89 +0.0 18,889 + GFF5965 0.89 +0.4
Or see this region's nucleotide sequence