Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5955 and GFF5956 are separated by 144 nucleotides GFF5956 and GFF5957 are separated by 42 nucleotides GFF5957 and GFF5958 are separated by 7 nucleotides GFF5958 and GFF5959 are separated by 2 nucleotides
GFF5955 - Transcriptional regulator, LysR family, at 10,856 to 11,773
GFF5955
GFF5956 - FIG01055484: hypothetical protein, at 11,918 to 12,601
GFF5956
GFF5957 - Uncharacterized MFS-type transporter, at 12,644 to 13,969
GFF5957
GFF5958 - FIG00537018: hypothetical protein, at 13,977 to 14,696
GFF5958
GFF5959 - Putative amidase R03093, at 14,699 to 16,048
GFF5959
Position (kb) 12
13
14 Strain fitness (log2 ratio) -1
0
1
2 at 11.945 kb on - strand at 12.032 kb on + strand, within GFF5956 at 12.033 kb on - strand, within GFF5956 at 12.092 kb on + strand, within GFF5956 at 12.119 kb on + strand, within GFF5956 at 12.119 kb on + strand, within GFF5956 at 12.120 kb on - strand, within GFF5956 at 12.120 kb on - strand, within GFF5956 at 12.120 kb on - strand, within GFF5956 at 12.389 kb on + strand, within GFF5956 at 12.389 kb on + strand, within GFF5956 at 12.637 kb on + strand at 12.637 kb on + strand at 12.637 kb on + strand at 12.637 kb on + strand at 12.637 kb on + strand at 12.637 kb on + strand at 12.638 kb on - strand at 12.638 kb on - strand at 12.638 kb on - strand at 12.638 kb on - strand at 12.758 kb on + strand at 12.758 kb on + strand at 12.758 kb on + strand at 12.759 kb on - strand at 12.773 kb on + strand at 12.774 kb on - strand at 12.774 kb on - strand at 12.861 kb on - strand, within GFF5957 at 12.872 kb on + strand, within GFF5957 at 12.872 kb on + strand, within GFF5957 at 12.873 kb on - strand, within GFF5957 at 12.900 kb on + strand, within GFF5957 at 13.001 kb on + strand, within GFF5957 at 13.001 kb on + strand, within GFF5957 at 13.002 kb on - strand, within GFF5957 at 13.442 kb on + strand, within GFF5957 at 13.443 kb on - strand, within GFF5957 at 13.443 kb on - strand, within GFF5957 at 13.443 kb on - strand, within GFF5957 at 13.472 kb on + strand, within GFF5957 at 13.473 kb on - strand, within GFF5957 at 13.473 kb on - strand, within GFF5957 at 13.601 kb on + strand, within GFF5957 at 13.601 kb on + strand, within GFF5957 at 13.724 kb on + strand, within GFF5957 at 13.724 kb on + strand, within GFF5957 at 13.775 kb on + strand, within GFF5957 at 13.796 kb on + strand, within GFF5957 at 13.797 kb on - strand, within GFF5957 at 13.797 kb on - strand, within GFF5957 at 13.797 kb on - strand, within GFF5957 at 13.889 kb on + strand at 13.890 kb on - strand at 13.890 kb on - strand at 13.890 kb on - strand at 14.166 kb on + strand, within GFF5958 at 14.166 kb on + strand, within GFF5958 at 14.167 kb on - strand, within GFF5958 at 14.322 kb on + strand, within GFF5958 at 14.664 kb on + strand at 14.664 kb on + strand at 14.831 kb on + strand at 14.832 kb on - strand at 14.832 kb on - strand at 14.936 kb on + strand, within GFF5959 at 14.937 kb on - strand, within GFF5959 at 14.937 kb on - strand, within GFF5959 at 14.937 kb on - strand, within GFF5959
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 11,945 - +0.6 12,032 + GFF5956 0.17 -1.0 12,033 - GFF5956 0.17 -1.2 12,092 + GFF5956 0.25 +0.6 12,119 + GFF5956 0.29 -0.2 12,119 + GFF5956 0.29 -0.4 12,120 - GFF5956 0.30 +1.6 12,120 - GFF5956 0.30 -1.5 12,120 - GFF5956 0.30 -0.6 12,389 + GFF5956 0.69 +0.4 12,389 + GFF5956 0.69 -0.2 12,637 + -0.5 12,637 + -0.5 12,637 + -0.1 12,637 + -0.5 12,637 + -0.7 12,637 + -1.4 12,638 - -0.1 12,638 - -0.1 12,638 - +0.2 12,638 - -0.1 12,758 + -0.7 12,758 + +0.6 12,758 + -0.7 12,759 - -1.0 12,773 + -0.0 12,774 - -0.4 12,774 - +0.6 12,861 - GFF5957 0.16 -0.4 12,872 + GFF5957 0.17 +1.6 12,872 + GFF5957 0.17 +0.1 12,873 - GFF5957 0.17 -0.2 12,900 + GFF5957 0.19 +1.0 13,001 + GFF5957 0.27 +1.6 13,001 + GFF5957 0.27 +0.7 13,002 - GFF5957 0.27 -0.4 13,442 + GFF5957 0.60 +0.6 13,443 - GFF5957 0.60 +0.3 13,443 - GFF5957 0.60 -0.2 13,443 - GFF5957 0.60 +0.4 13,472 + GFF5957 0.62 -0.5 13,473 - GFF5957 0.63 -0.4 13,473 - GFF5957 0.63 -0.1 13,601 + GFF5957 0.72 +0.0 13,601 + GFF5957 0.72 -0.2 13,724 + GFF5957 0.81 +0.1 13,724 + GFF5957 0.81 -0.1 13,775 + GFF5957 0.85 +0.3 13,796 + GFF5957 0.87 +0.8 13,797 - GFF5957 0.87 -0.7 13,797 - GFF5957 0.87 +0.2 13,797 - GFF5957 0.87 -0.1 13,889 + +0.6 13,890 - +0.1 13,890 - +0.8 13,890 - -0.7 14,166 + GFF5958 0.26 +0.4 14,166 + GFF5958 0.26 -0.8 14,167 - GFF5958 0.26 +0.5 14,322 + GFF5958 0.48 -0.5 14,664 + +0.9 14,664 + +1.9 14,831 + +0.0 14,832 - -1.1 14,832 - -0.7 14,936 + GFF5959 0.18 +0.2 14,937 - GFF5959 0.18 +0.4 14,937 - GFF5959 0.18 -0.7 14,937 - GFF5959 0.18 -1.2
Or see this region's nucleotide sequence