Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5845 and GFF5846 are separated by 87 nucleotides GFF5846 and GFF5847 are separated by 1 nucleotides GFF5847 and GFF5848 overlap by 1 nucleotides GFF5848 and GFF5849 are separated by 13 nucleotides
GFF5845 - NAD synthetase (EC 6.3.1.5), at 22,425 to 23,282
GFF5845
GFF5846 - FIG00453548: hypothetical protein, at 23,370 to 24,089
GFF5846
GFF5847 - putative membrane protein, at 24,091 to 26,745
GFF5847
GFF5848 - Flagellar motor protein, at 26,745 to 27,404
GFF5848
GFF5849 - FIG01210206: hypothetical protein, at 27,418 to 28,077
GFF5849
Position (kb) 24
25
26
27 Strain fitness (log2 ratio) -2
-1
0
1 at 23.145 kb on + strand, within GFF5845 at 23.145 kb on + strand, within GFF5845 at 23.145 kb on + strand, within GFF5845 at 23.145 kb on + strand, within GFF5845 at 23.145 kb on + strand, within GFF5845 at 23.146 kb on - strand, within GFF5845 at 23.146 kb on - strand, within GFF5845 at 23.146 kb on - strand, within GFF5845 at 23.146 kb on - strand, within GFF5845 at 23.146 kb on - strand, within GFF5845 at 23.340 kb on + strand at 23.340 kb on + strand at 23.340 kb on + strand at 23.341 kb on - strand at 23.348 kb on + strand at 23.349 kb on - strand at 24.160 kb on + strand at 24.161 kb on - strand at 24.214 kb on + strand at 24.215 kb on - strand at 24.409 kb on + strand, within GFF5847 at 24.409 kb on + strand, within GFF5847 at 24.409 kb on + strand, within GFF5847 at 24.410 kb on - strand, within GFF5847 at 24.410 kb on - strand, within GFF5847 at 24.410 kb on - strand, within GFF5847 at 24.871 kb on + strand, within GFF5847 at 24.872 kb on - strand, within GFF5847 at 24.872 kb on - strand, within GFF5847 at 24.872 kb on - strand, within GFF5847 at 24.872 kb on - strand, within GFF5847 at 25.148 kb on + strand, within GFF5847 at 25.148 kb on + strand, within GFF5847 at 25.508 kb on - strand, within GFF5847 at 25.648 kb on + strand, within GFF5847 at 25.648 kb on + strand, within GFF5847 at 25.649 kb on - strand, within GFF5847 at 26.632 kb on + strand at 26.632 kb on + strand at 26.632 kb on + strand at 26.632 kb on + strand at 26.632 kb on + strand at 26.632 kb on + strand at 26.633 kb on - strand at 26.633 kb on - strand at 26.633 kb on - strand at 26.633 kb on - strand at 26.633 kb on - strand at 26.633 kb on - strand at 27.099 kb on + strand, within GFF5848 at 27.099 kb on + strand, within GFF5848 at 27.099 kb on + strand, within GFF5848 at 27.100 kb on - strand, within GFF5848 at 27.100 kb on - strand, within GFF5848 at 27.100 kb on - strand, within GFF5848 at 27.583 kb on + strand, within GFF5849
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 23,145 + GFF5845 0.84 -0.2 23,145 + GFF5845 0.84 -1.8 23,145 + GFF5845 0.84 -0.3 23,145 + GFF5845 0.84 -0.2 23,145 + GFF5845 0.84 -0.3 23,146 - GFF5845 0.84 +0.6 23,146 - GFF5845 0.84 -0.7 23,146 - GFF5845 0.84 -0.1 23,146 - GFF5845 0.84 -0.9 23,146 - GFF5845 0.84 +0.4 23,340 + +0.2 23,340 + +0.8 23,340 + +0.4 23,341 - -0.1 23,348 + -0.0 23,349 - -0.1 24,160 + -0.7 24,161 - -0.4 24,214 + +0.7 24,215 - -0.5 24,409 + GFF5847 0.12 +0.1 24,409 + GFF5847 0.12 -1.6 24,409 + GFF5847 0.12 +0.5 24,410 - GFF5847 0.12 -1.2 24,410 - GFF5847 0.12 -0.3 24,410 - GFF5847 0.12 -0.9 24,871 + GFF5847 0.29 -0.8 24,872 - GFF5847 0.29 -0.5 24,872 - GFF5847 0.29 -0.1 24,872 - GFF5847 0.29 -0.7 24,872 - GFF5847 0.29 -0.1 25,148 + GFF5847 0.40 -0.1 25,148 + GFF5847 0.40 -0.2 25,508 - GFF5847 0.53 -0.3 25,648 + GFF5847 0.59 -0.6 25,648 + GFF5847 0.59 +0.1 25,649 - GFF5847 0.59 -0.5 26,632 + +0.1 26,632 + -0.6 26,632 + -0.5 26,632 + +0.4 26,632 + -1.6 26,632 + -1.8 26,633 - -0.6 26,633 - -0.9 26,633 - +0.7 26,633 - -0.6 26,633 - -0.4 26,633 - -0.1 27,099 + GFF5848 0.54 +0.7 27,099 + GFF5848 0.54 +0.0 27,099 + GFF5848 0.54 -1.1 27,100 - GFF5848 0.54 -0.3 27,100 - GFF5848 0.54 +1.1 27,100 - GFF5848 0.54 -1.0 27,583 + GFF5849 0.25 -0.1
Or see this region's nucleotide sequence