Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5825 and GFF5826 are separated by 10 nucleotides GFF5826 and GFF5827 overlap by 4 nucleotides GFF5827 and GFF5828 overlap by 4 nucleotides GFF5828 and GFF5829 are separated by 12 nucleotides
GFF5825 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 1,559 to 2,266
GFF5825
GFF5826 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 2,277 to 2,984
GFF5826
GFF5827 - FIG00452956: hypothetical protein, at 2,981 to 4,054
GFF5827
GFF5828 - Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1), at 4,051 to 4,920
GFF5828
GFF5829 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 4,933 to 6,201
GFF5829
Position (kb) 2
3
4
5 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1.994 kb on + strand, within GFF5825 at 1.994 kb on + strand, within GFF5825 at 2.294 kb on - strand at 2.294 kb on - strand at 3.120 kb on + strand, within GFF5827 at 3.121 kb on - strand, within GFF5827 at 3.121 kb on - strand, within GFF5827 at 3.201 kb on + strand, within GFF5827 at 3.201 kb on + strand, within GFF5827 at 3.201 kb on + strand, within GFF5827 at 3.202 kb on - strand, within GFF5827 at 3.202 kb on - strand, within GFF5827 at 3.202 kb on - strand, within GFF5827 at 3.202 kb on - strand, within GFF5827 at 3.202 kb on - strand, within GFF5827 at 3.202 kb on - strand, within GFF5827 at 3.489 kb on + strand, within GFF5827 at 3.490 kb on - strand, within GFF5827 at 3.490 kb on - strand, within GFF5827 at 3.490 kb on - strand, within GFF5827 at 3.645 kb on + strand, within GFF5827 at 3.645 kb on + strand, within GFF5827 at 3.645 kb on + strand, within GFF5827 at 3.646 kb on - strand, within GFF5827 at 3.646 kb on - strand, within GFF5827 at 3.795 kb on + strand, within GFF5827 at 3.795 kb on + strand, within GFF5827 at 4.306 kb on + strand, within GFF5828 at 4.306 kb on + strand, within GFF5828 at 4.307 kb on - strand, within GFF5828 at 4.586 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.835 kb on + strand at 4.835 kb on + strand at 4.869 kb on - strand at 4.910 kb on + strand at 4.934 kb on + strand at 4.935 kb on - strand at 4.935 kb on - strand at 4.935 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 1,994 + GFF5825 0.61 +0.3 1,994 + GFF5825 0.61 -0.5 2,294 - -0.7 2,294 - +0.4 3,120 + GFF5827 0.13 -0.5 3,121 - GFF5827 0.13 +0.8 3,121 - GFF5827 0.13 +0.0 3,201 + GFF5827 0.20 -1.8 3,201 + GFF5827 0.20 +0.5 3,201 + GFF5827 0.20 +1.3 3,202 - GFF5827 0.21 +0.0 3,202 - GFF5827 0.21 +0.2 3,202 - GFF5827 0.21 -0.6 3,202 - GFF5827 0.21 -0.2 3,202 - GFF5827 0.21 +0.0 3,202 - GFF5827 0.21 +0.3 3,489 + GFF5827 0.47 -0.1 3,490 - GFF5827 0.47 -0.3 3,490 - GFF5827 0.47 -1.0 3,490 - GFF5827 0.47 +0.7 3,645 + GFF5827 0.62 +1.9 3,645 + GFF5827 0.62 +0.3 3,645 + GFF5827 0.62 -0.4 3,646 - GFF5827 0.62 +2.3 3,646 - GFF5827 0.62 -0.1 3,795 + GFF5827 0.76 +1.1 3,795 + GFF5827 0.76 +0.1 4,306 + GFF5828 0.29 -0.2 4,306 + GFF5828 0.29 +0.5 4,307 - GFF5828 0.29 -0.1 4,586 + GFF5828 0.61 -0.5 4,778 + GFF5828 0.84 +0.1 4,778 + GFF5828 0.84 -0.8 4,778 + GFF5828 0.84 -0.2 4,778 + GFF5828 0.84 +0.9 4,835 + +0.6 4,835 + -1.4 4,869 - -0.5 4,910 + -0.2 4,934 + -0.6 4,935 - +0.9 4,935 - -0.2 4,935 - +0.5
Or see this region's nucleotide sequence