Strain Fitness in Variovorax sp. SCN45 around GFF5821

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5820 and GFF5821 are separated by 270 nucleotidesGFF5821 and GFF5822 overlap by 4 nucleotides GFF5820 - hypothetical protein, at 199,121 to 199,843 GFF5820 GFF5821 - no description, at 200,114 to 200,938 GFF5821 GFF5822 - hypothetical protein, at 200,935 to 201,882 GFF5822 Position (kb) 200 201Strain fitness (log2 ratio) -2 -1 0 1 2at 199.120 kb on + strandat 199.120 kb on + strandat 199.120 kb on + strandat 199.120 kb on + strandat 199.121 kb on - strandat 199.121 kb on - strandat 199.121 kb on - strandat 199.121 kb on - strandat 199.121 kb on - strandat 199.198 kb on - strand, within GFF5820at 199.271 kb on - strand, within GFF5820at 199.271 kb on - strand, within GFF5820at 199.271 kb on - strand, within GFF5820at 199.302 kb on - strand, within GFF5820at 199.302 kb on - strand, within GFF5820at 199.382 kb on + strand, within GFF5820at 199.409 kb on + strand, within GFF5820at 199.410 kb on - strand, within GFF5820at 199.437 kb on + strand, within GFF5820at 199.444 kb on + strand, within GFF5820at 199.444 kb on + strand, within GFF5820at 199.444 kb on + strand, within GFF5820at 199.445 kb on - strand, within GFF5820at 199.445 kb on - strand, within GFF5820at 199.583 kb on + strand, within GFF5820at 199.583 kb on + strand, within GFF5820at 199.583 kb on + strand, within GFF5820at 199.584 kb on - strand, within GFF5820at 199.584 kb on - strand, within GFF5820at 199.584 kb on - strand, within GFF5820at 199.705 kb on + strand, within GFF5820at 199.710 kb on + strand, within GFF5820at 199.710 kb on + strand, within GFF5820at 199.710 kb on + strand, within GFF5820at 199.710 kb on + strand, within GFF5820at 199.710 kb on + strand, within GFF5820at 199.711 kb on - strand, within GFF5820at 199.724 kb on + strand, within GFF5820at 199.725 kb on - strand, within GFF5820at 199.725 kb on - strand, within GFF5820at 199.758 kb on - strand, within GFF5820at 199.791 kb on + strandat 199.791 kb on + strandat 199.795 kb on + strandat 199.814 kb on - strandat 199.814 kb on - strandat 199.814 kb on - strandat 199.835 kb on + strandat 199.900 kb on + strandat 199.900 kb on + strandat 199.901 kb on - strandat 199.901 kb on - strandat 199.908 kb on - strandat 199.916 kb on - strandat 200.035 kb on + strandat 200.080 kb on + strandat 200.089 kb on + strandat 200.089 kb on + strandat 200.090 kb on - strandat 200.106 kb on - strandat 200.111 kb on + strandat 200.112 kb on - strandat 200.176 kb on + strandat 200.200 kb on + strand, within GFF5821at 200.201 kb on - strand, within GFF5821at 200.347 kb on + strand, within GFF5821at 200.348 kb on - strand, within GFF5821at 200.348 kb on - strand, within GFF5821at 200.348 kb on - strand, within GFF5821at 200.384 kb on + strand, within GFF5821at 200.384 kb on + strand, within GFF5821at 200.385 kb on - strand, within GFF5821at 200.385 kb on - strand, within GFF5821at 200.402 kb on + strand, within GFF5821at 200.403 kb on - strand, within GFF5821at 200.403 kb on - strand, within GFF5821at 200.474 kb on + strand, within GFF5821at 200.475 kb on - strand, within GFF5821at 200.475 kb on - strand, within GFF5821at 200.478 kb on + strand, within GFF5821at 200.478 kb on + strand, within GFF5821at 200.480 kb on + strand, within GFF5821at 200.480 kb on + strand, within GFF5821at 200.480 kb on + strand, within GFF5821at 200.481 kb on - strand, within GFF5821at 200.481 kb on - strand, within GFF5821at 200.513 kb on + strand, within GFF5821at 200.513 kb on + strand, within GFF5821at 200.623 kb on - strand, within GFF5821at 200.623 kb on - strand, within GFF5821at 200.624 kb on + strand, within GFF5821at 200.624 kb on + strand, within GFF5821at 200.624 kb on + strand, within GFF5821at 200.625 kb on - strand, within GFF5821at 200.718 kb on + strand, within GFF5821at 200.768 kb on + strand, within GFF5821at 200.769 kb on - strand, within GFF5821at 200.769 kb on - strand, within GFF5821at 200.781 kb on - strand, within GFF5821at 200.781 kb on - strand, within GFF5821at 200.838 kb on + strand, within GFF5821at 200.839 kb on - strand, within GFF5821at 200.839 kb on - strand, within GFF5821at 200.839 kb on - strand, within GFF5821at 200.861 kb on + strandat 200.861 kb on + strandat 200.862 kb on - strandat 200.932 kb on + strandat 200.933 kb on - strandat 200.938 kb on + strandat 200.938 kb on + strandat 200.939 kb on - strandat 200.939 kb on - strandat 200.972 kb on - strandat 200.985 kb on - strandat 200.985 kb on - strandat 200.985 kb on - strandat 201.093 kb on + strand, within GFF5822at 201.106 kb on + strand, within GFF5822at 201.462 kb on + strand, within GFF5822at 201.463 kb on - strand, within GFF5822at 201.463 kb on - strand, within GFF5822at 201.463 kb on - strand, within GFF5822at 201.541 kb on + strand, within GFF5822at 201.541 kb on + strand, within GFF5822at 201.541 kb on + strand, within GFF5822at 201.541 kb on + strand, within GFF5822at 201.565 kb on + strand, within GFF5822at 201.565 kb on + strand, within GFF5822at 201.614 kb on + strand, within GFF5822at 201.614 kb on + strand, within GFF5822at 201.615 kb on - strand, within GFF5822at 201.628 kb on + strand, within GFF5822at 201.628 kb on + strand, within GFF5822at 201.628 kb on + strand, within GFF5822at 201.631 kb on + strand, within GFF5822at 201.631 kb on + strand, within GFF5822at 201.631 kb on + strand, within GFF5822at 201.631 kb on + strand, within GFF5822at 201.631 kb on + strand, within GFF5822at 201.631 kb on + strand, within GFF5822at 201.631 kb on + strand, within GFF5822at 201.631 kb on + strand, within GFF5822at 201.632 kb on - strand, within GFF5822at 201.632 kb on - strand, within GFF5822at 201.632 kb on - strand, within GFF5822at 201.632 kb on - strand, within GFF5822at 201.638 kb on + strand, within GFF5822at 201.639 kb on - strand, within GFF5822at 201.755 kb on - strand, within GFF5822at 201.828 kb on + strandat 201.828 kb on + strandat 201.829 kb on - strandat 201.829 kb on - strandat 201.921 kb on - strandat 201.935 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
199,120 + +0.3
199,120 + -0.5
199,120 + -1.8
199,120 + -0.2
199,121 - -0.8
199,121 - +0.1
199,121 - +0.4
199,121 - +0.4
199,121 - +0.1
199,198 - GFF5820 0.11 -0.4
199,271 - GFF5820 0.21 -0.2
199,271 - GFF5820 0.21 -0.7
199,271 - GFF5820 0.21 +0.7
199,302 - GFF5820 0.25 -0.9
199,302 - GFF5820 0.25 -0.4
199,382 + GFF5820 0.36 -0.3
199,409 + GFF5820 0.40 -0.3
199,410 - GFF5820 0.40 -0.8
199,437 + GFF5820 0.44 -0.2
199,444 + GFF5820 0.45 +1.1
199,444 + GFF5820 0.45 -0.2
199,444 + GFF5820 0.45 -0.9
199,445 - GFF5820 0.45 +1.0
199,445 - GFF5820 0.45 +0.4
199,583 + GFF5820 0.64 +0.1
199,583 + GFF5820 0.64 +0.1
199,583 + GFF5820 0.64 +0.2
199,584 - GFF5820 0.64 -1.3
199,584 - GFF5820 0.64 -1.3
199,584 - GFF5820 0.64 +1.2
199,705 + GFF5820 0.81 -0.2
199,710 + GFF5820 0.81 +0.0
199,710 + GFF5820 0.81 -0.6
199,710 + GFF5820 0.81 -0.1
199,710 + GFF5820 0.81 -0.2
199,710 + GFF5820 0.81 -0.3
199,711 - GFF5820 0.82 -0.1
199,724 + GFF5820 0.83 -0.4
199,725 - GFF5820 0.84 -0.5
199,725 - GFF5820 0.84 -1.1
199,758 - GFF5820 0.88 -1.1
199,791 + +0.3
199,791 + -0.6
199,795 + -0.4
199,814 - -1.1
199,814 - -0.1
199,814 - -0.0
199,835 + -0.4
199,900 + -0.6
199,900 + +0.1
199,901 - -0.5
199,901 - -0.1
199,908 - -0.6
199,916 - -0.7
200,035 + -0.6
200,080 + -1.8
200,089 + -0.3
200,089 + +0.0
200,090 - -1.1
200,106 - -0.2
200,111 + -0.2
200,112 - -0.7
200,176 + +0.7
200,200 + GFF5821 0.10 -0.5
200,201 - GFF5821 0.11 -0.8
200,347 + GFF5821 0.28 -0.8
200,348 - GFF5821 0.28 -0.7
200,348 - GFF5821 0.28 -0.7
200,348 - GFF5821 0.28 -0.2
200,384 + GFF5821 0.33 -0.5
200,384 + GFF5821 0.33 -2.3
200,385 - GFF5821 0.33 -0.3
200,385 - GFF5821 0.33 -0.0
200,402 + GFF5821 0.35 -0.1
200,403 - GFF5821 0.35 -0.7
200,403 - GFF5821 0.35 -0.3
200,474 + GFF5821 0.44 -0.9
200,475 - GFF5821 0.44 -0.7
200,475 - GFF5821 0.44 +0.4
200,478 + GFF5821 0.44 +0.4
200,478 + GFF5821 0.44 -1.2
200,480 + GFF5821 0.44 +0.1
200,480 + GFF5821 0.44 +0.5
200,480 + GFF5821 0.44 -0.3
200,481 - GFF5821 0.44 -0.1
200,481 - GFF5821 0.44 -0.1
200,513 + GFF5821 0.48 -0.8
200,513 + GFF5821 0.48 +0.0
200,623 - GFF5821 0.62 -2.2
200,623 - GFF5821 0.62 -1.3
200,624 + GFF5821 0.62 -0.5
200,624 + GFF5821 0.62 -0.5
200,624 + GFF5821 0.62 -0.2
200,625 - GFF5821 0.62 -0.8
200,718 + GFF5821 0.73 -0.1
200,768 + GFF5821 0.79 -1.1
200,769 - GFF5821 0.79 -0.4
200,769 - GFF5821 0.79 -0.3
200,781 - GFF5821 0.81 +0.4
200,781 - GFF5821 0.81 -1.2
200,838 + GFF5821 0.88 -0.2
200,839 - GFF5821 0.88 +0.7
200,839 - GFF5821 0.88 +0.3
200,839 - GFF5821 0.88 -0.6
200,861 + -0.1
200,861 + -0.4
200,862 - -0.3
200,932 + +0.0
200,933 - -0.0
200,938 + -0.4
200,938 + -0.9
200,939 - -0.6
200,939 - +0.1
200,972 - +0.7
200,985 - -0.7
200,985 - -1.2
200,985 - -0.3
201,093 + GFF5822 0.17 +0.4
201,106 + GFF5822 0.18 -0.1
201,462 + GFF5822 0.56 -0.4
201,463 - GFF5822 0.56 +0.0
201,463 - GFF5822 0.56 -0.6
201,463 - GFF5822 0.56 +0.6
201,541 + GFF5822 0.64 -0.0
201,541 + GFF5822 0.64 +0.2
201,541 + GFF5822 0.64 +0.0
201,541 + GFF5822 0.64 -0.6
201,565 + GFF5822 0.66 -0.4
201,565 + GFF5822 0.66 -0.9
201,614 + GFF5822 0.72 -0.8
201,614 + GFF5822 0.72 -0.1
201,615 - GFF5822 0.72 -0.6
201,628 + GFF5822 0.73 +0.1
201,628 + GFF5822 0.73 +0.7
201,628 + GFF5822 0.73 +0.2
201,631 + GFF5822 0.73 +0.1
201,631 + GFF5822 0.73 +0.7
201,631 + GFF5822 0.73 -0.6
201,631 + GFF5822 0.73 -0.0
201,631 + GFF5822 0.73 -0.3
201,631 + GFF5822 0.73 -0.9
201,631 + GFF5822 0.73 -0.3
201,631 + GFF5822 0.73 -0.7
201,632 - GFF5822 0.74 -0.3
201,632 - GFF5822 0.74 +1.3
201,632 - GFF5822 0.74 -0.2
201,632 - GFF5822 0.74 +1.4
201,638 + GFF5822 0.74 +2.1
201,639 - GFF5822 0.74 -0.5
201,755 - GFF5822 0.86 -1.3
201,828 + -0.0
201,828 + +0.4
201,829 - -1.0
201,829 - +0.5
201,921 - +0.5
201,935 + +0.2

Or see this region's nucleotide sequence