Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5799 and GFF5800 are separated by 183 nucleotides GFF5800 and GFF5801 overlap by 4 nucleotides
GFF5799 - Urea ABC transporter, substrate-binding protein UrtA, at 173,644 to 174,912
GFF5799
GFF5800 - Urea ABC transporter, permease protein UrtB, at 175,096 to 176,643
GFF5800
GFF5801 - Urea ABC transporter, permease protein UrtC, at 176,640 to 177,857
GFF5801
Position (kb) 175
176
177 Strain fitness (log2 ratio) -1
0
1
2 at 174.109 kb on + strand, within GFF5799 at 174.110 kb on - strand, within GFF5799 at 174.166 kb on + strand, within GFF5799 at 174.166 kb on + strand, within GFF5799 at 174.167 kb on - strand, within GFF5799 at 174.167 kb on - strand, within GFF5799 at 174.206 kb on - strand, within GFF5799 at 174.250 kb on + strand, within GFF5799 at 174.250 kb on + strand, within GFF5799 at 174.251 kb on - strand, within GFF5799 at 174.251 kb on - strand, within GFF5799 at 174.251 kb on - strand, within GFF5799 at 174.251 kb on - strand, within GFF5799 at 174.274 kb on + strand, within GFF5799 at 174.367 kb on + strand, within GFF5799 at 174.367 kb on + strand, within GFF5799 at 174.368 kb on - strand, within GFF5799 at 174.368 kb on - strand, within GFF5799 at 174.493 kb on + strand, within GFF5799 at 174.551 kb on - strand, within GFF5799 at 174.859 kb on + strand at 174.860 kb on - strand at 174.860 kb on - strand at 174.860 kb on - strand at 174.861 kb on + strand at 174.862 kb on - strand at 174.910 kb on + strand at 174.910 kb on + strand at 174.910 kb on + strand at 174.911 kb on - strand at 174.911 kb on - strand at 175.262 kb on - strand, within GFF5800 at 175.303 kb on + strand, within GFF5800 at 175.820 kb on - strand, within GFF5800 at 175.820 kb on - strand, within GFF5800 at 175.877 kb on - strand, within GFF5800 at 175.877 kb on - strand, within GFF5800 at 175.885 kb on + strand, within GFF5800 at 175.886 kb on - strand, within GFF5800 at 175.913 kb on - strand, within GFF5800 at 175.913 kb on - strand, within GFF5800 at 175.913 kb on - strand, within GFF5800 at 175.939 kb on + strand, within GFF5800 at 175.939 kb on + strand, within GFF5800 at 175.939 kb on + strand, within GFF5800 at 175.939 kb on + strand, within GFF5800 at 175.940 kb on - strand, within GFF5800 at 176.335 kb on + strand, within GFF5800 at 176.335 kb on + strand, within GFF5800 at 176.336 kb on - strand, within GFF5800 at 176.336 kb on - strand, within GFF5800 at 176.336 kb on - strand, within GFF5800 at 176.425 kb on + strand, within GFF5800 at 176.425 kb on + strand, within GFF5800 at 176.425 kb on + strand, within GFF5800 at 176.425 kb on + strand, within GFF5800 at 176.426 kb on - strand, within GFF5800 at 176.426 kb on - strand, within GFF5800 at 176.488 kb on + strand, within GFF5800 at 176.489 kb on - strand at 176.788 kb on - strand, within GFF5801 at 176.788 kb on - strand, within GFF5801 at 176.820 kb on + strand, within GFF5801 at 176.820 kb on + strand, within GFF5801 at 176.910 kb on + strand, within GFF5801 at 176.926 kb on - strand, within GFF5801 at 176.926 kb on - strand, within GFF5801 at 176.926 kb on - strand, within GFF5801 at 176.926 kb on - strand, within GFF5801 at 176.958 kb on + strand, within GFF5801 at 176.959 kb on - strand, within GFF5801 at 176.959 kb on - strand, within GFF5801 at 177.053 kb on - strand, within GFF5801 at 177.129 kb on + strand, within GFF5801 at 177.130 kb on - strand, within GFF5801 at 177.418 kb on - strand, within GFF5801 at 177.474 kb on + strand, within GFF5801 at 177.474 kb on + strand, within GFF5801
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 174,109 + GFF5799 0.37 -1.4 174,110 - GFF5799 0.37 +1.4 174,166 + GFF5799 0.41 -0.5 174,166 + GFF5799 0.41 -0.4 174,167 - GFF5799 0.41 -0.5 174,167 - GFF5799 0.41 -0.8 174,206 - GFF5799 0.44 -0.7 174,250 + GFF5799 0.48 -0.3 174,250 + GFF5799 0.48 +0.8 174,251 - GFF5799 0.48 -0.7 174,251 - GFF5799 0.48 -0.5 174,251 - GFF5799 0.48 -1.0 174,251 - GFF5799 0.48 -0.4 174,274 + GFF5799 0.50 +1.1 174,367 + GFF5799 0.57 +1.4 174,367 + GFF5799 0.57 -0.4 174,368 - GFF5799 0.57 -0.8 174,368 - GFF5799 0.57 -1.0 174,493 + GFF5799 0.67 -0.9 174,551 - GFF5799 0.71 +0.7 174,859 + -0.7 174,860 - -0.5 174,860 - +0.7 174,860 - +2.3 174,861 + -1.2 174,862 - -0.2 174,910 + +0.9 174,910 + -0.6 174,910 + -0.2 174,911 - +0.1 174,911 - +0.0 175,262 - GFF5800 0.11 -0.1 175,303 + GFF5800 0.13 -1.0 175,820 - GFF5800 0.47 -0.8 175,820 - GFF5800 0.47 -0.8 175,877 - GFF5800 0.50 -0.5 175,877 - GFF5800 0.50 -0.9 175,885 + GFF5800 0.51 -0.3 175,886 - GFF5800 0.51 +0.3 175,913 - GFF5800 0.53 -0.5 175,913 - GFF5800 0.53 -0.7 175,913 - GFF5800 0.53 +0.5 175,939 + GFF5800 0.54 +0.3 175,939 + GFF5800 0.54 -0.3 175,939 + GFF5800 0.54 -1.0 175,939 + GFF5800 0.54 -0.5 175,940 - GFF5800 0.55 -1.4 176,335 + GFF5800 0.80 -0.3 176,335 + GFF5800 0.80 -0.2 176,336 - GFF5800 0.80 -0.5 176,336 - GFF5800 0.80 +0.1 176,336 - GFF5800 0.80 +1.7 176,425 + GFF5800 0.86 -0.0 176,425 + GFF5800 0.86 -0.3 176,425 + GFF5800 0.86 +0.9 176,425 + GFF5800 0.86 +0.4 176,426 - GFF5800 0.86 -0.4 176,426 - GFF5800 0.86 +0.1 176,488 + GFF5800 0.90 +0.1 176,489 - -0.8 176,788 - GFF5801 0.12 -0.8 176,788 - GFF5801 0.12 +0.1 176,820 + GFF5801 0.15 +0.4 176,820 + GFF5801 0.15 -0.0 176,910 + GFF5801 0.22 +0.4 176,926 - GFF5801 0.23 -0.5 176,926 - GFF5801 0.23 +0.1 176,926 - GFF5801 0.23 +0.1 176,926 - GFF5801 0.23 -0.4 176,958 + GFF5801 0.26 -0.5 176,959 - GFF5801 0.26 +0.7 176,959 - GFF5801 0.26 -1.3 177,053 - GFF5801 0.34 +0.2 177,129 + GFF5801 0.40 -1.1 177,130 - GFF5801 0.40 +0.7 177,418 - GFF5801 0.64 -0.2 177,474 + GFF5801 0.68 -0.8 177,474 + GFF5801 0.68 -0.2
Or see this region's nucleotide sequence