Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5796 and GFF5797 are separated by 23 nucleotides GFF5797 and GFF5798 are separated by 65 nucleotides GFF5798 and GFF5799 are separated by 116 nucleotides GFF5799 and GFF5800 are separated by 183 nucleotides
GFF5796 - no description, at 172,168 to 172,863
GFF5796
GFF5797 - no description, at 172,887 to 173,090
GFF5797
GFF5798 - hypothetical protein, at 173,156 to 173,527
GFF5798
GFF5799 - Urea ABC transporter, substrate-binding protein UrtA, at 173,644 to 174,912
GFF5799
GFF5800 - Urea ABC transporter, permease protein UrtB, at 175,096 to 176,643
GFF5800
Position (kb) 173
174
175 Strain fitness (log2 ratio) -2
-1
0
1
2 at 172.686 kb on + strand, within GFF5796 at 172.687 kb on - strand, within GFF5796 at 172.775 kb on + strand, within GFF5796 at 172.775 kb on + strand, within GFF5796 at 172.775 kb on + strand, within GFF5796 at 172.776 kb on - strand, within GFF5796 at 172.776 kb on - strand, within GFF5796 at 172.916 kb on - strand, within GFF5797 at 172.922 kb on + strand, within GFF5797 at 172.923 kb on - strand, within GFF5797 at 172.923 kb on - strand, within GFF5797 at 172.997 kb on + strand, within GFF5797 at 172.998 kb on - strand, within GFF5797 at 173.031 kb on + strand, within GFF5797 at 173.032 kb on - strand, within GFF5797 at 173.061 kb on + strand, within GFF5797 at 173.128 kb on - strand at 173.128 kb on - strand at 173.148 kb on + strand at 173.168 kb on + strand at 173.168 kb on + strand at 173.168 kb on + strand at 173.168 kb on + strand at 173.168 kb on + strand at 173.168 kb on + strand at 173.169 kb on - strand at 173.169 kb on - strand at 173.169 kb on - strand at 173.426 kb on + strand, within GFF5798 at 173.426 kb on + strand, within GFF5798 at 173.427 kb on - strand, within GFF5798 at 173.507 kb on + strand at 173.508 kb on - strand at 173.508 kb on - strand at 173.530 kb on - strand at 173.539 kb on + strand at 173.540 kb on - strand at 173.540 kb on - strand at 173.553 kb on + strand at 173.554 kb on - strand at 174.031 kb on + strand, within GFF5799 at 174.032 kb on - strand, within GFF5799 at 174.032 kb on - strand, within GFF5799 at 174.109 kb on + strand, within GFF5799 at 174.110 kb on - strand, within GFF5799 at 174.166 kb on + strand, within GFF5799 at 174.166 kb on + strand, within GFF5799 at 174.167 kb on - strand, within GFF5799 at 174.167 kb on - strand, within GFF5799 at 174.206 kb on - strand, within GFF5799 at 174.250 kb on + strand, within GFF5799 at 174.250 kb on + strand, within GFF5799 at 174.251 kb on - strand, within GFF5799 at 174.251 kb on - strand, within GFF5799 at 174.251 kb on - strand, within GFF5799 at 174.251 kb on - strand, within GFF5799 at 174.274 kb on + strand, within GFF5799 at 174.367 kb on + strand, within GFF5799 at 174.367 kb on + strand, within GFF5799 at 174.368 kb on - strand, within GFF5799 at 174.368 kb on - strand, within GFF5799 at 174.493 kb on + strand, within GFF5799 at 174.551 kb on - strand, within GFF5799 at 174.859 kb on + strand at 174.860 kb on - strand at 174.860 kb on - strand at 174.860 kb on - strand at 174.861 kb on + strand at 174.862 kb on - strand at 174.910 kb on + strand at 174.910 kb on + strand at 174.910 kb on + strand at 174.911 kb on - strand at 174.911 kb on - strand at 175.262 kb on - strand, within GFF5800 at 175.303 kb on + strand, within GFF5800 at 175.820 kb on - strand, within GFF5800 at 175.820 kb on - strand, within GFF5800 at 175.877 kb on - strand, within GFF5800 at 175.877 kb on - strand, within GFF5800 at 175.885 kb on + strand, within GFF5800 at 175.886 kb on - strand, within GFF5800
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 172,686 + GFF5796 0.74 -0.3 172,687 - GFF5796 0.75 +0.3 172,775 + GFF5796 0.87 +1.2 172,775 + GFF5796 0.87 -0.3 172,775 + GFF5796 0.87 +0.1 172,776 - GFF5796 0.87 -0.6 172,776 - GFF5796 0.87 +0.5 172,916 - GFF5797 0.14 +1.3 172,922 + GFF5797 0.17 -0.3 172,923 - GFF5797 0.18 +0.4 172,923 - GFF5797 0.18 -0.5 172,997 + GFF5797 0.54 +0.3 172,998 - GFF5797 0.54 -0.2 173,031 + GFF5797 0.71 -2.3 173,032 - GFF5797 0.71 -0.3 173,061 + GFF5797 0.85 -1.2 173,128 - +2.7 173,128 - -1.5 173,148 + -0.4 173,168 + -0.6 173,168 + +0.1 173,168 + -0.3 173,168 + -0.0 173,168 + +0.7 173,168 + +0.2 173,169 - +0.2 173,169 - -1.5 173,169 - +0.1 173,426 + GFF5798 0.73 +0.3 173,426 + GFF5798 0.73 -1.2 173,427 - GFF5798 0.73 +0.0 173,507 + -0.6 173,508 - -0.1 173,508 - -0.2 173,530 - -1.1 173,539 + -0.3 173,540 - -0.1 173,540 - +0.1 173,553 + +0.0 173,554 - -0.3 174,031 + GFF5799 0.30 +0.7 174,032 - GFF5799 0.31 -0.1 174,032 - GFF5799 0.31 -0.2 174,109 + GFF5799 0.37 -1.4 174,110 - GFF5799 0.37 +1.4 174,166 + GFF5799 0.41 -0.5 174,166 + GFF5799 0.41 -0.4 174,167 - GFF5799 0.41 -0.5 174,167 - GFF5799 0.41 -0.8 174,206 - GFF5799 0.44 -0.7 174,250 + GFF5799 0.48 -0.3 174,250 + GFF5799 0.48 +0.8 174,251 - GFF5799 0.48 -0.7 174,251 - GFF5799 0.48 -0.5 174,251 - GFF5799 0.48 -1.0 174,251 - GFF5799 0.48 -0.4 174,274 + GFF5799 0.50 +1.1 174,367 + GFF5799 0.57 +1.4 174,367 + GFF5799 0.57 -0.4 174,368 - GFF5799 0.57 -0.8 174,368 - GFF5799 0.57 -1.0 174,493 + GFF5799 0.67 -0.9 174,551 - GFF5799 0.71 +0.7 174,859 + -0.7 174,860 - -0.5 174,860 - +0.7 174,860 - +2.3 174,861 + -1.2 174,862 - -0.2 174,910 + +0.9 174,910 + -0.6 174,910 + -0.2 174,911 - +0.1 174,911 - +0.0 175,262 - GFF5800 0.11 -0.1 175,303 + GFF5800 0.13 -1.0 175,820 - GFF5800 0.47 -0.8 175,820 - GFF5800 0.47 -0.8 175,877 - GFF5800 0.50 -0.5 175,877 - GFF5800 0.50 -0.9 175,885 + GFF5800 0.51 -0.3 175,886 - GFF5800 0.51 +0.3
Or see this region's nucleotide sequence