Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5699 and GFF5700 overlap by 1 nucleotides GFF5700 and GFF5701 are separated by 108 nucleotides GFF5701 and GFF5702 overlap by 4 nucleotides GFF5702 and GFF5703 overlap by 4 nucleotides
GFF5699 - Smr domain protein, at 74,057 to 74,713
GFF5699
GFF5700 - UPF0758 family protein, at 74,713 to 75,390
GFF5700
GFF5701 - FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8), at 75,499 to 75,942
GFF5701
GFF5702 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.7.4), at 75,939 to 76,907
GFF5702
GFF5703 - pyridoxal-phosphate dependent enzyme family protein, at 76,904 to 77,869
GFF5703
Position (kb) 75
76 Strain fitness (log2 ratio) -1
0
1 at 74.930 kb on + strand, within GFF5700 at 75.053 kb on + strand, within GFF5700 at 75.576 kb on + strand, within GFF5701 at 75.576 kb on + strand, within GFF5701 at 75.833 kb on - strand, within GFF5701 at 75.938 kb on + strand at 75.938 kb on + strand at 75.938 kb on + strand at 75.938 kb on + strand at 75.938 kb on + strand at 75.938 kb on + strand at 75.939 kb on - strand at 75.939 kb on - strand at 75.939 kb on - strand at 75.939 kb on - strand at 75.939 kb on - strand at 75.939 kb on - strand at 76.941 kb on + strand at 76.942 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 74,930 + GFF5700 0.32 -0.1 75,053 + GFF5700 0.50 -1.0 75,576 + GFF5701 0.17 -1.0 75,576 + GFF5701 0.17 -1.6 75,833 - GFF5701 0.75 +0.4 75,938 + -1.1 75,938 + +1.7 75,938 + -0.7 75,938 + -0.6 75,938 + -0.2 75,938 + -0.2 75,939 - +0.4 75,939 - -0.1 75,939 - -1.5 75,939 - -0.1 75,939 - -1.5 75,939 - -0.3 76,941 + -0.2 76,942 - +0.1
Or see this region's nucleotide sequence