Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF568 and GFF569 are separated by 42 nucleotides GFF569 and GFF570 overlap by 4 nucleotides GFF570 and GFF571 are separated by 7 nucleotides GFF571 and GFF572 overlap by 4 nucleotides
GFF568 - Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193), at 614,570 to 615,667
GFF568
GFF569 - Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9), at 615,710 to 616,375
GFF569
GFF570 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25), at 616,372 to 617,526
GFF570
GFF571 - 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78), at 617,534 to 617,998
GFF571
GFF572 - Transcription termination protein NusB, at 617,995 to 618,552
GFF572
Position (kb) 616
617
618 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 615.665 kb on + strand at 615.665 kb on + strand at 615.665 kb on + strand at 615.666 kb on - strand at 615.666 kb on - strand at 615.666 kb on - strand at 615.666 kb on - strand at 615.672 kb on + strand at 615.815 kb on + strand, within GFF569 at 615.816 kb on - strand, within GFF569 at 616.021 kb on - strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.128 kb on - strand, within GFF569 at 616.128 kb on - strand, within GFF569 at 616.128 kb on - strand, within GFF569 at 616.278 kb on + strand, within GFF569 at 616.278 kb on + strand, within GFF569 at 616.278 kb on + strand, within GFF569 at 616.279 kb on - strand, within GFF569 at 616.279 kb on - strand, within GFF569 at 616.301 kb on + strand, within GFF569 at 616.301 kb on + strand, within GFF569 at 616.301 kb on + strand, within GFF569 at 616.301 kb on + strand, within GFF569 at 616.301 kb on + strand, within GFF569 at 616.301 kb on + strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.352 kb on + strand at 616.352 kb on + strand at 616.352 kb on + strand at 616.352 kb on + strand at 616.352 kb on + strand at 616.352 kb on + strand at 616.353 kb on - strand at 616.353 kb on - strand at 616.353 kb on - strand at 616.353 kb on - strand at 616.353 kb on - strand at 617.395 kb on + strand, within GFF570 at 617.395 kb on + strand, within GFF570 at 617.396 kb on - strand, within GFF570 at 617.488 kb on + strand at 617.489 kb on - strand at 617.509 kb on + strand at 617.509 kb on + strand at 617.509 kb on + strand at 617.510 kb on - strand at 617.804 kb on + strand, within GFF571 at 617.804 kb on + strand, within GFF571 at 617.804 kb on + strand, within GFF571 at 617.804 kb on + strand, within GFF571 at 617.804 kb on + strand, within GFF571 at 617.804 kb on + strand, within GFF571 at 617.804 kb on + strand, within GFF571 at 617.864 kb on + strand, within GFF571
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 615,665 + +0.9 615,665 + -0.8 615,665 + -0.3 615,666 - -0.1 615,666 - -1.0 615,666 - -1.5 615,666 - -0.3 615,672 + -0.3 615,815 + GFF569 0.16 -1.1 615,816 - GFF569 0.16 +0.1 616,021 - GFF569 0.47 -1.5 616,127 + GFF569 0.63 +0.7 616,127 + GFF569 0.63 -0.5 616,127 + GFF569 0.63 -0.5 616,127 + GFF569 0.63 -0.2 616,127 + GFF569 0.63 +0.6 616,127 + GFF569 0.63 -0.5 616,127 + GFF569 0.63 +2.7 616,127 + GFF569 0.63 -0.6 616,127 + GFF569 0.63 -0.3 616,127 + GFF569 0.63 -0.0 616,127 + GFF569 0.63 -0.6 616,127 + GFF569 0.63 +0.1 616,127 + GFF569 0.63 -1.5 616,127 + GFF569 0.63 +0.8 616,127 + GFF569 0.63 -0.4 616,128 - GFF569 0.63 -0.9 616,128 - GFF569 0.63 -1.0 616,128 - GFF569 0.63 +0.3 616,278 + GFF569 0.85 +2.9 616,278 + GFF569 0.85 -0.1 616,278 + GFF569 0.85 -0.2 616,279 - GFF569 0.85 +0.7 616,279 - GFF569 0.85 +0.3 616,301 + GFF569 0.89 -0.5 616,301 + GFF569 0.89 -0.3 616,301 + GFF569 0.89 -0.7 616,301 + GFF569 0.89 -0.3 616,301 + GFF569 0.89 -0.8 616,301 + GFF569 0.89 -1.1 616,302 - GFF569 0.89 -0.4 616,302 - GFF569 0.89 -0.5 616,302 - GFF569 0.89 -1.5 616,302 - GFF569 0.89 -0.7 616,302 - GFF569 0.89 -1.2 616,302 - GFF569 0.89 -1.1 616,302 - GFF569 0.89 +1.3 616,302 - GFF569 0.89 +0.9 616,302 - GFF569 0.89 +0.8 616,352 + -1.0 616,352 + -0.3 616,352 + -0.4 616,352 + -0.1 616,352 + -2.0 616,352 + +0.2 616,353 - -1.0 616,353 - -1.1 616,353 - +0.3 616,353 - -1.7 616,353 - +0.9 617,395 + GFF570 0.89 -1.5 617,395 + GFF570 0.89 +0.5 617,396 - GFF570 0.89 -0.7 617,488 + -0.1 617,489 - -0.5 617,509 + +0.1 617,509 + -1.0 617,509 + +0.5 617,510 - -0.9 617,804 + GFF571 0.58 -1.3 617,804 + GFF571 0.58 +0.2 617,804 + GFF571 0.58 +1.3 617,804 + GFF571 0.58 -0.1 617,804 + GFF571 0.58 -1.4 617,804 + GFF571 0.58 -0.3 617,804 + GFF571 0.58 +2.0 617,864 + GFF571 0.71 -0.2
Or see this region's nucleotide sequence