Strain Fitness in Variovorax sp. SCN45 around GFF5673

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5671 and GFF5672 are separated by 74 nucleotidesGFF5672 and GFF5673 overlap by 4 nucleotidesGFF5673 and GFF5674 are separated by 79 nucleotidesGFF5674 and GFF5675 overlap by 1 nucleotides GFF5671 - FIG01964566: Predicted membrane protein, hemolysin III homolog, at 45,876 to 46,562 GFF5671 GFF5672 - Dna binding response regulator PrrA (RegA), at 46,637 to 47,182 GFF5672 GFF5673 - Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-), at 47,179 to 48,495 GFF5673 GFF5674 - Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion, at 48,575 to 49,372 GFF5674 GFF5675 - Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-), at 49,372 to 49,779 GFF5675 Position (kb) 47 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.324 kb on + strand, within GFF5671at 46.324 kb on + strand, within GFF5671at 46.324 kb on + strand, within GFF5671at 46.325 kb on - strand, within GFF5671at 46.325 kb on - strand, within GFF5671at 46.325 kb on - strand, within GFF5671at 46.325 kb on - strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.343 kb on - strand, within GFF5671at 46.343 kb on - strand, within GFF5671at 46.343 kb on - strand, within GFF5671at 46.343 kb on - strand, within GFF5671at 46.417 kb on + strand, within GFF5671at 46.417 kb on + strand, within GFF5671at 46.418 kb on - strand, within GFF5671at 46.418 kb on - strand, within GFF5671at 46.630 kb on + strandat 46.630 kb on + strandat 46.630 kb on + strandat 46.631 kb on - strandat 46.631 kb on - strandat 46.635 kb on + strandat 46.635 kb on + strandat 46.635 kb on + strandat 46.635 kb on + strandat 46.635 kb on + strandat 46.635 kb on + strandat 46.635 kb on + strandat 46.636 kb on - strandat 46.636 kb on - strandat 46.636 kb on - strandat 46.636 kb on - strandat 46.636 kb on - strandat 46.636 kb on - strandat 46.636 kb on - strandat 46.638 kb on + strandat 46.638 kb on + strandat 46.638 kb on + strandat 46.638 kb on + strandat 46.638 kb on + strandat 46.638 kb on + strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.675 kb on + strandat 46.675 kb on + strandat 46.676 kb on - strandat 46.676 kb on - strandat 46.747 kb on + strand, within GFF5672at 46.866 kb on + strand, within GFF5672at 46.866 kb on + strand, within GFF5672at 46.867 kb on - strand, within GFF5672at 46.867 kb on - strand, within GFF5672at 47.023 kb on - strand, within GFF5672at 47.088 kb on + strand, within GFF5672at 47.088 kb on + strand, within GFF5672at 47.088 kb on + strand, within GFF5672at 47.420 kb on + strand, within GFF5673at 47.421 kb on - strand, within GFF5673at 47.627 kb on + strand, within GFF5673at 47.627 kb on + strand, within GFF5673at 47.627 kb on + strand, within GFF5673at 47.824 kb on + strand, within GFF5673at 48.065 kb on + strand, within GFF5673at 48.065 kb on + strand, within GFF5673at 48.065 kb on + strand, within GFF5673at 48.065 kb on + strand, within GFF5673at 48.065 kb on + strand, within GFF5673at 48.066 kb on - strand, within GFF5673at 48.066 kb on - strand, within GFF5673at 48.066 kb on - strand, within GFF5673at 48.066 kb on - strand, within GFF5673at 48.066 kb on - strand, within GFF5673at 48.066 kb on - strand, within GFF5673at 48.257 kb on + strand, within GFF5673at 48.257 kb on + strand, within GFF5673at 48.257 kb on + strand, within GFF5673at 48.258 kb on - strand, within GFF5673at 48.258 kb on - strand, within GFF5673at 48.425 kb on + strandat 48.425 kb on + strandat 48.681 kb on + strand, within GFF5674at 48.681 kb on + strand, within GFF5674at 48.681 kb on + strand, within GFF5674at 48.681 kb on + strand, within GFF5674at 48.682 kb on - strand, within GFF5674at 48.682 kb on - strand, within GFF5674at 48.682 kb on - strand, within GFF5674at 48.696 kb on + strand, within GFF5674at 48.697 kb on - strand, within GFF5674at 48.697 kb on - strand, within GFF5674at 48.810 kb on + strand, within GFF5674at 48.810 kb on + strand, within GFF5674at 48.810 kb on + strand, within GFF5674at 48.810 kb on + strand, within GFF5674at 48.810 kb on + strand, within GFF5674at 48.810 kb on + strand, within GFF5674at 48.811 kb on - strand, within GFF5674at 48.811 kb on - strand, within GFF5674at 48.811 kb on - strand, within GFF5674at 48.811 kb on - strand, within GFF5674at 48.811 kb on - strand, within GFF5674at 49.430 kb on + strand, within GFF5675at 49.430 kb on + strand, within GFF5675at 49.430 kb on + strand, within GFF5675at 49.430 kb on + strand, within GFF5675at 49.430 kb on + strand, within GFF5675at 49.430 kb on + strand, within GFF5675at 49.430 kb on + strand, within GFF5675at 49.430 kb on + strand, within GFF5675at 49.430 kb on + strand, within GFF5675at 49.430 kb on + strand, within GFF5675at 49.431 kb on - strand, within GFF5675at 49.431 kb on - strand, within GFF5675at 49.431 kb on - strand, within GFF5675at 49.431 kb on - strand, within GFF5675at 49.431 kb on - strand, within GFF5675at 49.431 kb on - strand, within GFF5675at 49.431 kb on - strand, within GFF5675at 49.431 kb on - strand, within GFF5675

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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46,240 + GFF5671 0.53 -0.1
46,240 + GFF5671 0.53 -0.1
46,240 + GFF5671 0.53 -0.3
46,240 + GFF5671 0.53 -1.3
46,240 + GFF5671 0.53 -0.4
46,240 + GFF5671 0.53 -0.3
46,240 + GFF5671 0.53 +1.1
46,240 + GFF5671 0.53 +0.5
46,240 + GFF5671 0.53 -0.5
46,240 + GFF5671 0.53 +0.8
46,240 + GFF5671 0.53 -1.1
46,241 - GFF5671 0.53 -1.1
46,241 - GFF5671 0.53 -0.2
46,241 - GFF5671 0.53 -0.1
46,241 - GFF5671 0.53 +0.1
46,241 - GFF5671 0.53 -0.6
46,241 - GFF5671 0.53 -1.3
46,241 - GFF5671 0.53 +0.5
46,241 - GFF5671 0.53 -0.5
46,241 - GFF5671 0.53 +0.1
46,241 - GFF5671 0.53 -0.7
46,261 + GFF5671 0.56 -0.2
46,261 + GFF5671 0.56 -0.4
46,261 + GFF5671 0.56 -0.5
46,261 + GFF5671 0.56 -0.6
46,261 + GFF5671 0.56 +0.5
46,262 - GFF5671 0.56 +0.1
46,262 - GFF5671 0.56 +0.1
46,262 - GFF5671 0.56 -0.0
46,262 - GFF5671 0.56 -0.1
46,262 - GFF5671 0.56 -0.5
46,262 - GFF5671 0.56 +0.1
46,262 - GFF5671 0.56 +0.1
46,262 - GFF5671 0.56 +0.3
46,262 - GFF5671 0.56 -1.3
46,324 + GFF5671 0.65 -0.4
46,324 + GFF5671 0.65 -0.2
46,324 + GFF5671 0.65 -0.6
46,325 - GFF5671 0.65 +0.2
46,325 - GFF5671 0.65 +1.1
46,325 - GFF5671 0.65 -1.1
46,325 - GFF5671 0.65 +1.4
46,342 + GFF5671 0.68 -0.1
46,342 + GFF5671 0.68 -1.5
46,342 + GFF5671 0.68 -0.7
46,342 + GFF5671 0.68 -0.3
46,342 + GFF5671 0.68 -0.3
46,343 - GFF5671 0.68 -0.4
46,343 - GFF5671 0.68 -0.4
46,343 - GFF5671 0.68 -0.9
46,343 - GFF5671 0.68 -0.1
46,417 + GFF5671 0.79 +0.9
46,417 + GFF5671 0.79 -0.3
46,418 - GFF5671 0.79 +0.9
46,418 - GFF5671 0.79 +1.0
46,630 + +0.2
46,630 + -0.1
46,630 + +0.2
46,631 - +0.4
46,631 - +0.5
46,635 + -0.6
46,635 + +0.0
46,635 + -0.1
46,635 + -0.7
46,635 + -1.0
46,635 + +1.0
46,635 + +0.1
46,636 - +0.1
46,636 - -0.7
46,636 - -0.2
46,636 - -0.1
46,636 - -0.5
46,636 - -0.9
46,636 - -0.6
46,638 + +0.5
46,638 + +0.8
46,638 + -1.1
46,638 + +1.7
46,638 + -0.2
46,638 + -0.8
46,639 - -0.6
46,639 - +1.0
46,639 - -0.1
46,639 - -0.0
46,639 - -0.9
46,639 - -0.7
46,639 - +0.4
46,639 - +0.7
46,639 - +0.5
46,639 - -0.4
46,639 - +0.7
46,639 - -0.1
46,675 + -0.5
46,675 + -0.3
46,676 - -0.1
46,676 - -0.6
46,747 + GFF5672 0.20 +2.7
46,866 + GFF5672 0.42 -0.5
46,866 + GFF5672 0.42 -2.0
46,867 - GFF5672 0.42 -1.3
46,867 - GFF5672 0.42 +0.2
47,023 - GFF5672 0.71 -1.8
47,088 + GFF5672 0.83 -0.8
47,088 + GFF5672 0.83 -0.5
47,088 + GFF5672 0.83 +0.4
47,420 + GFF5673 0.18 -1.3
47,421 - GFF5673 0.18 -0.6
47,627 + GFF5673 0.34 -0.6
47,627 + GFF5673 0.34 -0.1
47,627 + GFF5673 0.34 -1.9
47,824 + GFF5673 0.49 -0.1
48,065 + GFF5673 0.67 +0.7
48,065 + GFF5673 0.67 +0.0
48,065 + GFF5673 0.67 -0.3
48,065 + GFF5673 0.67 -0.5
48,065 + GFF5673 0.67 -0.7
48,066 - GFF5673 0.67 -0.1
48,066 - GFF5673 0.67 -0.2
48,066 - GFF5673 0.67 -1.0
48,066 - GFF5673 0.67 +0.1
48,066 - GFF5673 0.67 -0.2
48,066 - GFF5673 0.67 -0.2
48,257 + GFF5673 0.82 +0.3
48,257 + GFF5673 0.82 -0.0
48,257 + GFF5673 0.82 -0.5
48,258 - GFF5673 0.82 -0.4
48,258 - GFF5673 0.82 -0.7
48,425 + -1.1
48,425 + +0.6
48,681 + GFF5674 0.13 +0.9
48,681 + GFF5674 0.13 +0.4
48,681 + GFF5674 0.13 -0.8
48,681 + GFF5674 0.13 -0.3
48,682 - GFF5674 0.13 +0.1
48,682 - GFF5674 0.13 +0.5
48,682 - GFF5674 0.13 -0.9
48,696 + GFF5674 0.15 -0.5
48,697 - GFF5674 0.15 -0.9
48,697 - GFF5674 0.15 -1.1
48,810 + GFF5674 0.29 -0.2
48,810 + GFF5674 0.29 -0.6
48,810 + GFF5674 0.29 -0.2
48,810 + GFF5674 0.29 -0.8
48,810 + GFF5674 0.29 +0.7
48,810 + GFF5674 0.29 -1.0
48,811 - GFF5674 0.30 -1.1
48,811 - GFF5674 0.30 -0.2
48,811 - GFF5674 0.30 +0.1
48,811 - GFF5674 0.30 +0.4
48,811 - GFF5674 0.30 -0.4
49,430 + GFF5675 0.14 -0.6
49,430 + GFF5675 0.14 +0.9
49,430 + GFF5675 0.14 +0.1
49,430 + GFF5675 0.14 -0.2
49,430 + GFF5675 0.14 -0.5
49,430 + GFF5675 0.14 +0.1
49,430 + GFF5675 0.14 -0.2
49,430 + GFF5675 0.14 -0.2
49,430 + GFF5675 0.14 -1.1
49,430 + GFF5675 0.14 -1.1
49,431 - GFF5675 0.14 -1.1
49,431 - GFF5675 0.14 +0.5
49,431 - GFF5675 0.14 -0.2
49,431 - GFF5675 0.14 -0.2
49,431 - GFF5675 0.14 -1.1
49,431 - GFF5675 0.14 +0.3
49,431 - GFF5675 0.14 -1.1
49,431 - GFF5675 0.14 -0.5

Or see this region's nucleotide sequence