Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5660 and GFF5661 are separated by 90 nucleotides GFF5661 and GFF5662 are separated by 33 nucleotides GFF5662 and GFF5663 overlap by 4 nucleotides
GFF5660 - Formate dehydrogenase O alpha subunit (EC 1.2.1.2) @ selenocysteine-containing, at 36,846 to 37,433
GFF5660
GFF5661 - hypothetical protein, at 37,524 to 37,823
GFF5661
GFF5662 - no description, at 37,857 to 38,027
GFF5662
GFF5663 - ABC transporter, fused permease protein, at 38,024 to 40,540
GFF5663
Position (kb) 37
38
39 Strain fitness (log2 ratio) -1
0
1 at 36.910 kb on + strand, within GFF5660 at 36.910 kb on + strand, within GFF5660 at 36.910 kb on + strand, within GFF5660 at 36.911 kb on - strand, within GFF5660 at 36.911 kb on - strand, within GFF5660 at 36.911 kb on - strand, within GFF5660 at 37.249 kb on + strand, within GFF5660 at 37.249 kb on + strand, within GFF5660 at 37.249 kb on + strand, within GFF5660 at 37.249 kb on + strand, within GFF5660 at 37.249 kb on + strand, within GFF5660 at 37.249 kb on + strand, within GFF5660 at 37.249 kb on + strand, within GFF5660 at 37.249 kb on + strand, within GFF5660 at 37.249 kb on + strand, within GFF5660 at 37.250 kb on - strand, within GFF5660 at 37.250 kb on - strand, within GFF5660 at 37.250 kb on - strand, within GFF5660 at 37.250 kb on - strand, within GFF5660 at 37.250 kb on - strand, within GFF5660 at 37.279 kb on + strand, within GFF5660 at 37.509 kb on + strand at 37.510 kb on - strand at 37.525 kb on + strand at 37.525 kb on + strand at 37.525 kb on + strand at 37.526 kb on - strand at 37.526 kb on - strand at 37.526 kb on - strand at 37.526 kb on - strand at 37.526 kb on - strand at 37.580 kb on + strand, within GFF5661 at 37.580 kb on + strand, within GFF5661 at 37.580 kb on + strand, within GFF5661 at 37.580 kb on + strand, within GFF5661 at 37.580 kb on + strand, within GFF5661 at 37.580 kb on + strand, within GFF5661 at 37.580 kb on + strand, within GFF5661 at 37.580 kb on + strand, within GFF5661 at 37.580 kb on + strand, within GFF5661 at 37.581 kb on - strand, within GFF5661 at 37.581 kb on - strand, within GFF5661 at 37.581 kb on - strand, within GFF5661 at 37.581 kb on - strand, within GFF5661 at 37.581 kb on - strand, within GFF5661 at 37.581 kb on - strand, within GFF5661 at 37.581 kb on - strand, within GFF5661 at 37.581 kb on - strand, within GFF5661 at 37.581 kb on - strand, within GFF5661 at 37.855 kb on + strand at 37.855 kb on + strand at 37.855 kb on + strand at 37.856 kb on - strand at 37.856 kb on - strand at 37.856 kb on - strand at 37.869 kb on + strand at 37.958 kb on + strand, within GFF5662 at 37.959 kb on - strand, within GFF5662 at 37.959 kb on - strand, within GFF5662 at 37.959 kb on - strand, within GFF5662 at 37.959 kb on - strand, within GFF5662 at 37.975 kb on + strand, within GFF5662 at 37.976 kb on - strand, within GFF5662 at 38.285 kb on + strand, within GFF5663 at 38.285 kb on + strand, within GFF5663 at 38.286 kb on - strand, within GFF5663 at 38.286 kb on - strand, within GFF5663 at 38.286 kb on - strand, within GFF5663 at 38.661 kb on - strand, within GFF5663 at 38.661 kb on - strand, within GFF5663 at 38.666 kb on + strand, within GFF5663 at 38.667 kb on - strand, within GFF5663 at 38.667 kb on - strand, within GFF5663 at 38.667 kb on - strand, within GFF5663 at 38.667 kb on - strand, within GFF5663 at 38.728 kb on - strand, within GFF5663 at 38.728 kb on - strand, within GFF5663 at 38.960 kb on + strand, within GFF5663 at 38.960 kb on + strand, within GFF5663 at 38.960 kb on + strand, within GFF5663 at 38.961 kb on - strand, within GFF5663 at 38.961 kb on - strand, within GFF5663
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 36,910 + GFF5660 0.11 -0.1 36,910 + GFF5660 0.11 -0.3 36,910 + GFF5660 0.11 +0.3 36,911 - GFF5660 0.11 -0.3 36,911 - GFF5660 0.11 -0.2 36,911 - GFF5660 0.11 -1.5 37,249 + GFF5660 0.69 -0.5 37,249 + GFF5660 0.69 -0.6 37,249 + GFF5660 0.69 -0.5 37,249 + GFF5660 0.69 +0.1 37,249 + GFF5660 0.69 -0.4 37,249 + GFF5660 0.69 -0.3 37,249 + GFF5660 0.69 -0.8 37,249 + GFF5660 0.69 +0.6 37,249 + GFF5660 0.69 +0.8 37,250 - GFF5660 0.69 -0.1 37,250 - GFF5660 0.69 -0.3 37,250 - GFF5660 0.69 +0.1 37,250 - GFF5660 0.69 +0.1 37,250 - GFF5660 0.69 +0.1 37,279 + GFF5660 0.74 -0.7 37,509 + +0.0 37,510 - -0.9 37,525 + -1.5 37,525 + +1.7 37,525 + +0.4 37,526 - -0.3 37,526 - +0.1 37,526 - -1.3 37,526 - -0.5 37,526 - +0.4 37,580 + GFF5661 0.19 -0.2 37,580 + GFF5661 0.19 -0.2 37,580 + GFF5661 0.19 -0.3 37,580 + GFF5661 0.19 +1.7 37,580 + GFF5661 0.19 +0.2 37,580 + GFF5661 0.19 -0.7 37,580 + GFF5661 0.19 +0.8 37,580 + GFF5661 0.19 +0.7 37,580 + GFF5661 0.19 +0.1 37,581 - GFF5661 0.19 -1.1 37,581 - GFF5661 0.19 +0.7 37,581 - GFF5661 0.19 +0.3 37,581 - GFF5661 0.19 -0.4 37,581 - GFF5661 0.19 -0.9 37,581 - GFF5661 0.19 -1.3 37,581 - GFF5661 0.19 -1.3 37,581 - GFF5661 0.19 -0.6 37,581 - GFF5661 0.19 +1.4 37,855 + -0.6 37,855 + -0.1 37,855 + -1.0 37,856 - +0.3 37,856 - -0.1 37,856 - -0.6 37,869 + -0.8 37,958 + GFF5662 0.59 +0.8 37,959 - GFF5662 0.60 +0.4 37,959 - GFF5662 0.60 -0.2 37,959 - GFF5662 0.60 +0.4 37,959 - GFF5662 0.60 +1.1 37,975 + GFF5662 0.69 +0.1 37,976 - GFF5662 0.70 +0.1 38,285 + GFF5663 0.10 -0.8 38,285 + GFF5663 0.10 +0.2 38,286 - GFF5663 0.10 +0.2 38,286 - GFF5663 0.10 -0.2 38,286 - GFF5663 0.10 +0.2 38,661 - GFF5663 0.25 -0.9 38,661 - GFF5663 0.25 -0.3 38,666 + GFF5663 0.26 -0.4 38,667 - GFF5663 0.26 +0.3 38,667 - GFF5663 0.26 +0.1 38,667 - GFF5663 0.26 -0.0 38,667 - GFF5663 0.26 +0.5 38,728 - GFF5663 0.28 +0.1 38,728 - GFF5663 0.28 -0.7 38,960 + GFF5663 0.37 -0.1 38,960 + GFF5663 0.37 -0.0 38,960 + GFF5663 0.37 -0.6 38,961 - GFF5663 0.37 -0.4 38,961 - GFF5663 0.37 +0.2
Or see this region's nucleotide sequence