Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5637 and GFF5638 are separated by 34 nucleotides GFF5638 and GFF5639 overlap by 4 nucleotides GFF5639 and GFF5640 are separated by 123 nucleotides GFF5640 and GFF5641 overlap by 4 nucleotides GFF5641 and GFF5642 are separated by 7 nucleotides
GFF5637 - Molybdenum ABC transporter ATP-binding protein ModC, at 12,944 to 13,732
GFF5637
GFF5638 - no description, at 13,767 to 14,048
GFF5638
GFF5639 - Death on curing protein, Doc toxin, at 14,045 to 14,359
GFF5639
GFF5640 - Putative formate dehydrogenase oxidoreductase protein, at 14,483 to 16,831
GFF5640
GFF5641 - Formate dehydrogenase chain D (EC 1.2.1.2), at 16,828 to 17,118
GFF5641
GFF5642 - Sulfur carrier protein FdhD, at 17,126 to 18,019
GFF5642
Position (kb) 14
15
16
17 Strain fitness (log2 ratio) -2
-1
0
1
2 at 13.580 kb on + strand, within GFF5637 at 13.580 kb on + strand, within GFF5637 at 13.580 kb on + strand, within GFF5637 at 13.581 kb on - strand, within GFF5637 at 13.581 kb on - strand, within GFF5637 at 13.581 kb on - strand, within GFF5637 at 13.581 kb on - strand, within GFF5637 at 13.581 kb on - strand, within GFF5637 at 13.741 kb on + strand at 13.749 kb on - strand at 13.756 kb on - strand at 13.965 kb on + strand, within GFF5638 at 14.051 kb on + strand at 14.051 kb on + strand at 14.051 kb on + strand at 14.052 kb on - strand at 14.052 kb on - strand at 14.052 kb on - strand at 14.052 kb on - strand at 14.163 kb on + strand, within GFF5639 at 14.163 kb on + strand, within GFF5639 at 14.163 kb on + strand, within GFF5639 at 14.164 kb on - strand, within GFF5639 at 14.164 kb on - strand, within GFF5639 at 14.164 kb on - strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.277 kb on - strand, within GFF5639 at 14.277 kb on - strand, within GFF5639 at 14.277 kb on - strand, within GFF5639 at 14.277 kb on - strand, within GFF5639 at 14.295 kb on + strand, within GFF5639 at 14.295 kb on + strand, within GFF5639 at 14.295 kb on + strand, within GFF5639 at 14.296 kb on - strand, within GFF5639 at 14.351 kb on + strand at 14.351 kb on + strand at 14.351 kb on + strand at 14.352 kb on - strand at 14.352 kb on - strand at 14.352 kb on - strand at 14.434 kb on + strand at 14.434 kb on + strand at 14.435 kb on - strand at 14.507 kb on + strand at 14.507 kb on + strand at 14.508 kb on - strand at 14.508 kb on - strand at 14.508 kb on - strand at 14.828 kb on + strand, within GFF5640 at 14.828 kb on + strand, within GFF5640 at 14.828 kb on + strand, within GFF5640 at 14.828 kb on + strand, within GFF5640 at 14.829 kb on - strand, within GFF5640 at 14.829 kb on - strand, within GFF5640 at 14.829 kb on - strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.972 kb on + strand, within GFF5640 at 14.972 kb on + strand, within GFF5640 at 14.972 kb on + strand, within GFF5640 at 14.972 kb on + strand, within GFF5640 at 14.973 kb on - strand, within GFF5640 at 14.973 kb on - strand, within GFF5640 at 14.993 kb on + strand, within GFF5640 at 14.993 kb on + strand, within GFF5640 at 15.308 kb on + strand, within GFF5640 at 15.308 kb on + strand, within GFF5640 at 15.309 kb on - strand, within GFF5640 at 15.309 kb on - strand, within GFF5640 at 15.309 kb on - strand, within GFF5640 at 15.309 kb on - strand, within GFF5640 at 15.309 kb on - strand, within GFF5640 at 15.309 kb on - strand, within GFF5640 at 15.548 kb on + strand, within GFF5640 at 15.548 kb on + strand, within GFF5640 at 15.548 kb on + strand, within GFF5640 at 15.548 kb on + strand, within GFF5640 at 15.548 kb on + strand, within GFF5640 at 15.548 kb on + strand, within GFF5640 at 15.548 kb on + strand, within GFF5640 at 15.548 kb on + strand, within GFF5640 at 15.548 kb on + strand, within GFF5640 at 15.549 kb on - strand, within GFF5640 at 15.549 kb on - strand, within GFF5640 at 15.549 kb on - strand, within GFF5640 at 15.905 kb on + strand, within GFF5640 at 15.905 kb on + strand, within GFF5640 at 15.905 kb on + strand, within GFF5640 at 15.905 kb on + strand, within GFF5640 at 15.905 kb on + strand, within GFF5640 at 15.905 kb on + strand, within GFF5640 at 15.905 kb on + strand, within GFF5640 at 15.906 kb on - strand, within GFF5640 at 15.906 kb on - strand, within GFF5640 at 15.906 kb on - strand, within GFF5640 at 15.906 kb on - strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.218 kb on - strand, within GFF5640 at 16.218 kb on - strand, within GFF5640 at 16.218 kb on - strand, within GFF5640 at 16.218 kb on - strand, within GFF5640 at 16.218 kb on - strand, within GFF5640 at 16.218 kb on - strand, within GFF5640 at 16.218 kb on - strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.473 kb on - strand, within GFF5640 at 16.473 kb on - strand, within GFF5640 at 16.473 kb on - strand, within GFF5640 at 16.473 kb on - strand, within GFF5640 at 16.473 kb on - strand, within GFF5640 at 16.473 kb on - strand, within GFF5640 at 16.487 kb on + strand, within GFF5640 at 16.487 kb on + strand, within GFF5640 at 16.487 kb on + strand, within GFF5640 at 16.488 kb on - strand, within GFF5640 at 16.488 kb on - strand, within GFF5640 at 16.488 kb on - strand, within GFF5640 at 16.488 kb on - strand, within GFF5640 at 16.655 kb on + strand at 16.655 kb on + strand at 16.655 kb on + strand at 16.655 kb on + strand at 16.656 kb on - strand at 16.656 kb on - strand at 16.656 kb on - strand at 16.685 kb on + strand at 16.685 kb on + strand at 16.685 kb on + strand at 16.685 kb on + strand at 16.685 kb on + strand at 16.685 kb on + strand at 16.685 kb on + strand at 16.685 kb on + strand at 16.685 kb on + strand at 16.685 kb on + strand at 16.686 kb on - strand at 16.686 kb on - strand at 16.686 kb on - strand at 16.688 kb on + strand at 16.688 kb on + strand at 16.688 kb on + strand at 16.689 kb on - strand at 16.689 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 13,580 + GFF5637 0.81 -0.9 13,580 + GFF5637 0.81 +0.7 13,580 + GFF5637 0.81 -1.2 13,581 - GFF5637 0.81 +0.1 13,581 - GFF5637 0.81 -0.3 13,581 - GFF5637 0.81 +1.7 13,581 - GFF5637 0.81 -1.0 13,581 - GFF5637 0.81 -0.1 13,741 + +0.3 13,749 - -1.9 13,756 - -0.6 13,965 + GFF5638 0.70 -1.1 14,051 + -0.6 14,051 + -0.3 14,051 + -0.5 14,052 - +0.3 14,052 - -1.0 14,052 - +0.1 14,052 - +0.9 14,163 + GFF5639 0.37 +0.0 14,163 + GFF5639 0.37 -0.5 14,163 + GFF5639 0.37 +0.1 14,164 - GFF5639 0.38 -1.3 14,164 - GFF5639 0.38 +0.5 14,164 - GFF5639 0.38 -0.4 14,276 + GFF5639 0.73 -0.8 14,276 + GFF5639 0.73 +1.1 14,276 + GFF5639 0.73 -0.4 14,276 + GFF5639 0.73 -0.0 14,276 + GFF5639 0.73 -0.8 14,276 + GFF5639 0.73 -1.2 14,276 + GFF5639 0.73 +0.3 14,277 - GFF5639 0.74 -0.3 14,277 - GFF5639 0.74 +0.5 14,277 - GFF5639 0.74 -0.8 14,277 - GFF5639 0.74 -0.3 14,295 + GFF5639 0.79 -0.5 14,295 + GFF5639 0.79 +1.3 14,295 + GFF5639 0.79 -0.5 14,296 - GFF5639 0.80 +1.1 14,351 + +0.5 14,351 + +0.4 14,351 + -0.3 14,352 - -1.5 14,352 - +0.2 14,352 - +2.0 14,434 + -0.6 14,434 + -0.8 14,435 - +0.1 14,507 + -0.9 14,507 + +0.2 14,508 - -0.6 14,508 - -0.1 14,508 - +0.5 14,828 + GFF5640 0.15 -0.6 14,828 + GFF5640 0.15 -0.2 14,828 + GFF5640 0.15 +0.9 14,828 + GFF5640 0.15 -0.8 14,829 - GFF5640 0.15 +0.2 14,829 - GFF5640 0.15 -0.1 14,829 - GFF5640 0.15 -1.1 14,849 + GFF5640 0.16 -0.1 14,849 + GFF5640 0.16 -0.1 14,849 + GFF5640 0.16 +1.1 14,849 + GFF5640 0.16 -0.4 14,849 + GFF5640 0.16 -0.5 14,849 + GFF5640 0.16 -0.3 14,849 + GFF5640 0.16 -0.5 14,849 + GFF5640 0.16 -1.2 14,849 + GFF5640 0.16 -0.5 14,849 + GFF5640 0.16 -1.3 14,849 + GFF5640 0.16 +0.7 14,849 + GFF5640 0.16 -0.4 14,849 + GFF5640 0.16 +0.7 14,849 + GFF5640 0.16 -0.6 14,849 + GFF5640 0.16 +1.7 14,849 + GFF5640 0.16 -0.2 14,849 + GFF5640 0.16 -0.3 14,849 + GFF5640 0.16 -0.3 14,849 + GFF5640 0.16 +0.9 14,850 - GFF5640 0.16 +0.7 14,850 - GFF5640 0.16 +1.4 14,850 - GFF5640 0.16 +1.7 14,850 - GFF5640 0.16 +0.5 14,850 - GFF5640 0.16 -0.3 14,850 - GFF5640 0.16 -0.6 14,850 - GFF5640 0.16 +0.2 14,850 - GFF5640 0.16 -0.3 14,850 - GFF5640 0.16 -0.3 14,850 - GFF5640 0.16 -1.3 14,850 - GFF5640 0.16 +0.2 14,850 - GFF5640 0.16 -0.1 14,850 - GFF5640 0.16 +0.4 14,933 + GFF5640 0.19 +0.9 14,933 + GFF5640 0.19 -0.8 14,933 + GFF5640 0.19 -0.4 14,933 + GFF5640 0.19 +0.4 14,933 + GFF5640 0.19 +0.1 14,933 + GFF5640 0.19 -0.6 14,933 + GFF5640 0.19 -0.7 14,933 + GFF5640 0.19 -0.6 14,933 + GFF5640 0.19 -0.8 14,934 - GFF5640 0.19 -0.4 14,934 - GFF5640 0.19 -1.4 14,934 - GFF5640 0.19 -0.5 14,934 - GFF5640 0.19 -1.2 14,934 - GFF5640 0.19 -0.6 14,934 - GFF5640 0.19 +0.1 14,934 - GFF5640 0.19 +0.4 14,972 + GFF5640 0.21 -0.7 14,972 + GFF5640 0.21 -0.6 14,972 + GFF5640 0.21 -0.2 14,972 + GFF5640 0.21 +0.1 14,973 - GFF5640 0.21 -0.4 14,973 - GFF5640 0.21 -0.6 14,993 + GFF5640 0.22 -1.2 14,993 + GFF5640 0.22 +0.2 15,308 + GFF5640 0.35 -0.5 15,308 + GFF5640 0.35 +0.4 15,309 - GFF5640 0.35 -0.3 15,309 - GFF5640 0.35 -1.2 15,309 - GFF5640 0.35 -0.5 15,309 - GFF5640 0.35 -0.0 15,309 - GFF5640 0.35 -0.4 15,309 - GFF5640 0.35 -0.0 15,548 + GFF5640 0.45 -0.2 15,548 + GFF5640 0.45 +1.0 15,548 + GFF5640 0.45 -0.4 15,548 + GFF5640 0.45 -0.2 15,548 + GFF5640 0.45 +0.4 15,548 + GFF5640 0.45 -0.3 15,548 + GFF5640 0.45 -0.2 15,548 + GFF5640 0.45 +0.1 15,548 + GFF5640 0.45 -0.7 15,549 - GFF5640 0.45 +1.3 15,549 - GFF5640 0.45 +0.4 15,549 - GFF5640 0.45 +1.1 15,905 + GFF5640 0.61 -0.9 15,905 + GFF5640 0.61 -0.6 15,905 + GFF5640 0.61 -0.6 15,905 + GFF5640 0.61 -1.1 15,905 + GFF5640 0.61 -0.1 15,905 + GFF5640 0.61 -1.4 15,905 + GFF5640 0.61 -0.8 15,906 - GFF5640 0.61 -0.1 15,906 - GFF5640 0.61 -0.6 15,906 - GFF5640 0.61 -0.0 15,906 - GFF5640 0.61 +0.2 16,217 + GFF5640 0.74 -0.4 16,217 + GFF5640 0.74 -1.3 16,217 + GFF5640 0.74 -0.2 16,217 + GFF5640 0.74 -0.2 16,217 + GFF5640 0.74 -0.0 16,217 + GFF5640 0.74 -0.3 16,217 + GFF5640 0.74 -0.3 16,217 + GFF5640 0.74 -0.3 16,217 + GFF5640 0.74 -0.4 16,217 + GFF5640 0.74 -0.5 16,218 - GFF5640 0.74 +0.5 16,218 - GFF5640 0.74 +0.0 16,218 - GFF5640 0.74 -0.4 16,218 - GFF5640 0.74 -0.8 16,218 - GFF5640 0.74 -0.8 16,218 - GFF5640 0.74 -0.4 16,218 - GFF5640 0.74 +0.3 16,472 + GFF5640 0.85 +0.3 16,472 + GFF5640 0.85 -0.5 16,472 + GFF5640 0.85 -1.4 16,472 + GFF5640 0.85 +0.0 16,472 + GFF5640 0.85 +0.3 16,472 + GFF5640 0.85 -0.1 16,472 + GFF5640 0.85 -0.4 16,472 + GFF5640 0.85 +2.1 16,472 + GFF5640 0.85 +0.2 16,472 + GFF5640 0.85 -0.4 16,473 - GFF5640 0.85 -0.1 16,473 - GFF5640 0.85 -0.6 16,473 - GFF5640 0.85 +0.3 16,473 - GFF5640 0.85 +0.5 16,473 - GFF5640 0.85 -1.2 16,473 - GFF5640 0.85 -0.2 16,487 + GFF5640 0.85 -0.6 16,487 + GFF5640 0.85 +0.2 16,487 + GFF5640 0.85 -0.1 16,488 - GFF5640 0.85 -0.3 16,488 - GFF5640 0.85 -0.9 16,488 - GFF5640 0.85 +0.2 16,488 - GFF5640 0.85 -0.9 16,655 + -1.5 16,655 + +0.8 16,655 + +1.4 16,655 + -0.4 16,656 - -0.7 16,656 - -1.2 16,656 - +0.3 16,685 + -1.3 16,685 + -0.1 16,685 + -0.1 16,685 + -0.6 16,685 + -0.5 16,685 + -0.6 16,685 + +0.2 16,685 + -0.2 16,685 + +0.1 16,685 + -0.7 16,686 - +0.0 16,686 - -0.2 16,686 - +0.3 16,688 + +0.9 16,688 + -0.8 16,688 + -0.3 16,689 - -0.1 16,689 - +0.3
Or see this region's nucleotide sequence