Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5612 and GFF5613 are separated by 152 nucleotides GFF5613 and GFF5614 overlap by 7 nucleotides GFF5614 and GFF5615 are separated by 45 nucleotides
GFF5612 - Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16), at 234,166 to 235,629
GFF5612
GFF5613 - Intracellular protease, at 235,782 to 236,351
GFF5613
GFF5614 - hypothetical protein, at 236,345 to 237,574
GFF5614
GFF5615 - Citrate synthase (si) (EC 2.3.3.1), at 237,620 to 238,759
GFF5615
Position (kb) 236
237
238 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 235.420 kb on + strand, within GFF5612 at 235.421 kb on - strand, within GFF5612 at 235.421 kb on - strand, within GFF5612 at 235.421 kb on - strand, within GFF5612 at 235.426 kb on + strand, within GFF5612 at 235.570 kb on + strand at 235.571 kb on - strand at 235.571 kb on - strand at 235.600 kb on + strand at 235.600 kb on + strand at 235.600 kb on + strand at 235.601 kb on - strand at 235.601 kb on - strand at 235.601 kb on - strand at 235.653 kb on + strand at 236.331 kb on + strand at 236.331 kb on + strand at 236.407 kb on + strand at 236.407 kb on + strand at 237.431 kb on - strand, within GFF5614 at 237.431 kb on - strand, within GFF5614 at 237.548 kb on + strand at 237.548 kb on + strand at 237.548 kb on + strand at 237.569 kb on - strand at 238.005 kb on - strand, within GFF5615 at 238.142 kb on + strand, within GFF5615 at 238.395 kb on - strand, within GFF5615 at 238.568 kb on + strand, within GFF5615 at 238.569 kb on - strand, within GFF5615
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 235,420 + GFF5612 0.86 +0.1 235,421 - GFF5612 0.86 +0.1 235,421 - GFF5612 0.86 +0.0 235,421 - GFF5612 0.86 -1.0 235,426 + GFF5612 0.86 -0.2 235,570 + +1.8 235,571 - -0.3 235,571 - -0.8 235,600 + -0.2 235,600 + +0.2 235,600 + -0.4 235,601 - +2.6 235,601 - -0.5 235,601 - +0.1 235,653 + -2.9 236,331 + +1.8 236,331 + -0.6 236,407 + -1.6 236,407 + +0.3 237,431 - GFF5614 0.88 +0.2 237,431 - GFF5614 0.88 +0.3 237,548 + -0.7 237,548 + -0.1 237,548 + -1.9 237,569 - +0.0 238,005 - GFF5615 0.34 +0.7 238,142 + GFF5615 0.46 -0.7 238,395 - GFF5615 0.68 -0.5 238,568 + GFF5615 0.83 -0.5 238,569 - GFF5615 0.83 +1.2
Or see this region's nucleotide sequence