Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5604 and GFF5605 are separated by 1 nucleotides GFF5605 and GFF5606 are separated by 1 nucleotides GFF5606 and GFF5607 are separated by 4 nucleotides
GFF5604 - D-xylose ABC transporter, permease protein XylH, at 222,885 to 224,075
GFF5604
GFF5605 - D-xylose ABC transporter, ATP-binding protein XylG, at 224,077 to 224,874
GFF5605
GFF5606 - Xylose-responsive transcription regulator, ROK family, at 224,876 to 226,039
GFF5606
GFF5607 - Sigma-54 activated regulatory protein, at 226,044 to 227,324
GFF5607
Position (kb) 224
225
226
227 Strain fitness (log2 ratio) -1
0
1
2 at 224.049 kb on + strand at 224.179 kb on + strand, within GFF5605 at 224.180 kb on - strand, within GFF5605 at 224.350 kb on + strand, within GFF5605 at 224.351 kb on - strand, within GFF5605 at 224.351 kb on - strand, within GFF5605 at 224.351 kb on - strand, within GFF5605 at 224.569 kb on + strand, within GFF5605 at 224.569 kb on + strand, within GFF5605 at 224.570 kb on - strand, within GFF5605 at 224.570 kb on - strand, within GFF5605 at 224.767 kb on + strand, within GFF5605 at 224.768 kb on - strand, within GFF5605 at 225.194 kb on + strand, within GFF5606 at 225.492 kb on - strand, within GFF5606 at 225.492 kb on - strand, within GFF5606 at 225.645 kb on + strand, within GFF5606 at 225.645 kb on + strand, within GFF5606 at 225.645 kb on + strand, within GFF5606 at 225.645 kb on + strand, within GFF5606 at 225.972 kb on - strand at 225.972 kb on - strand at 225.972 kb on - strand at 226.093 kb on + strand at 226.093 kb on + strand at 226.226 kb on + strand, within GFF5607 at 226.227 kb on - strand, within GFF5607 at 226.620 kb on + strand, within GFF5607 at 226.621 kb on - strand, within GFF5607 at 226.621 kb on - strand, within GFF5607 at 226.675 kb on + strand, within GFF5607 at 226.675 kb on + strand, within GFF5607 at 226.675 kb on + strand, within GFF5607 at 226.676 kb on - strand, within GFF5607 at 226.810 kb on + strand, within GFF5607 at 226.810 kb on + strand, within GFF5607 at 226.810 kb on + strand, within GFF5607 at 226.810 kb on + strand, within GFF5607 at 226.810 kb on + strand, within GFF5607 at 226.810 kb on + strand, within GFF5607 at 226.811 kb on - strand, within GFF5607 at 226.811 kb on - strand, within GFF5607 at 226.811 kb on - strand, within GFF5607 at 226.811 kb on - strand, within GFF5607 at 226.811 kb on - strand, within GFF5607
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 224,049 + -0.6 224,179 + GFF5605 0.13 +1.2 224,180 - GFF5605 0.13 -0.7 224,350 + GFF5605 0.34 -1.0 224,351 - GFF5605 0.34 +0.4 224,351 - GFF5605 0.34 -0.8 224,351 - GFF5605 0.34 +0.0 224,569 + GFF5605 0.62 -0.3 224,569 + GFF5605 0.62 +0.7 224,570 - GFF5605 0.62 -1.1 224,570 - GFF5605 0.62 -0.6 224,767 + GFF5605 0.86 +1.5 224,768 - GFF5605 0.87 -0.3 225,194 + GFF5606 0.27 +0.0 225,492 - GFF5606 0.53 +0.6 225,492 - GFF5606 0.53 +0.4 225,645 + GFF5606 0.66 +1.0 225,645 + GFF5606 0.66 +0.1 225,645 + GFF5606 0.66 +0.4 225,645 + GFF5606 0.66 +2.3 225,972 - -1.0 225,972 - +0.1 225,972 - +1.1 226,093 + -0.9 226,093 + +0.3 226,226 + GFF5607 0.14 +0.2 226,227 - GFF5607 0.14 +1.8 226,620 + GFF5607 0.45 -0.2 226,621 - GFF5607 0.45 +0.9 226,621 - GFF5607 0.45 -0.3 226,675 + GFF5607 0.49 +0.3 226,675 + GFF5607 0.49 -1.2 226,675 + GFF5607 0.49 -0.3 226,676 - GFF5607 0.49 +0.0 226,810 + GFF5607 0.60 +0.3 226,810 + GFF5607 0.60 -0.7 226,810 + GFF5607 0.60 -0.0 226,810 + GFF5607 0.60 +0.4 226,810 + GFF5607 0.60 +0.4 226,810 + GFF5607 0.60 -0.3 226,811 - GFF5607 0.60 -0.4 226,811 - GFF5607 0.60 -0.7 226,811 - GFF5607 0.60 +0.8 226,811 - GFF5607 0.60 -0.9 226,811 - GFF5607 0.60 +0.8
Or see this region's nucleotide sequence