Strain Fitness in Variovorax sp. SCN45 around GFF556

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF554 and GFF555 are separated by 17 nucleotidesGFF555 and GFF556 are separated by 81 nucleotidesGFF556 and GFF557 are separated by 70 nucleotides GFF554 - UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54), at 595,192 to 595,968 GFF554 GFF555 - Putative inner membrane protein, at 595,986 to 596,789 GFF555 GFF556 - no description, at 596,871 to 597,467 GFF556 GFF557 - Plectin 1, at 597,538 to 600,381 GFF557 Position (kb) 596 597 598Strain fitness (log2 ratio) -2 -1 0 1at 595.966 kb on + strandat 596.061 kb on + strandat 596.061 kb on + strandat 596.061 kb on + strandat 596.061 kb on + strandat 596.244 kb on + strand, within GFF555at 596.244 kb on + strand, within GFF555at 596.245 kb on - strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.332 kb on - strand, within GFF555at 596.332 kb on - strand, within GFF555at 596.332 kb on - strand, within GFF555at 596.332 kb on - strand, within GFF555at 596.427 kb on + strand, within GFF555at 596.427 kb on + strand, within GFF555at 596.427 kb on + strand, within GFF555at 596.427 kb on + strand, within GFF555at 596.427 kb on + strand, within GFF555at 596.428 kb on - strand, within GFF555at 596.428 kb on - strand, within GFF555at 596.428 kb on - strand, within GFF555at 596.560 kb on + strand, within GFF555at 596.560 kb on + strand, within GFF555at 596.574 kb on + strand, within GFF555at 596.574 kb on + strand, within GFF555at 596.574 kb on + strand, within GFF555at 596.575 kb on - strand, within GFF555at 596.575 kb on - strand, within GFF555at 596.575 kb on - strand, within GFF555at 596.599 kb on + strand, within GFF555at 596.599 kb on + strand, within GFF555at 596.599 kb on + strand, within GFF555at 596.599 kb on + strand, within GFF555at 596.600 kb on - strand, within GFF555at 596.600 kb on - strand, within GFF555at 596.600 kb on - strand, within GFF555at 596.643 kb on + strand, within GFF555at 596.643 kb on + strand, within GFF555at 596.644 kb on - strand, within GFF555at 596.691 kb on + strand, within GFF555at 596.691 kb on + strand, within GFF555at 596.692 kb on - strand, within GFF555at 596.692 kb on - strand, within GFF555at 596.765 kb on + strandat 596.805 kb on - strandat 596.831 kb on - strandat 596.831 kb on - strandat 596.844 kb on + strandat 596.845 kb on - strandat 596.863 kb on + strandat 596.863 kb on + strandat 596.864 kb on - strandat 596.864 kb on - strandat 596.871 kb on - strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.935 kb on + strand, within GFF556at 596.935 kb on + strand, within GFF556at 596.936 kb on - strand, within GFF556at 596.952 kb on + strand, within GFF556at 597.090 kb on + strand, within GFF556at 597.090 kb on + strand, within GFF556at 597.090 kb on + strand, within GFF556at 597.090 kb on + strand, within GFF556at 597.090 kb on + strand, within GFF556at 597.091 kb on - strand, within GFF556at 597.091 kb on - strand, within GFF556at 597.091 kb on - strand, within GFF556at 597.091 kb on - strand, within GFF556at 597.147 kb on + strand, within GFF556at 597.147 kb on + strand, within GFF556at 597.147 kb on + strand, within GFF556at 597.148 kb on - strand, within GFF556at 597.148 kb on - strand, within GFF556at 597.148 kb on - strand, within GFF556at 597.148 kb on - strand, within GFF556at 597.231 kb on + strand, within GFF556at 597.232 kb on - strand, within GFF556at 597.232 kb on - strand, within GFF556at 597.232 kb on - strand, within GFF556at 597.232 kb on - strand, within GFF556at 597.232 kb on - strand, within GFF556at 597.232 kb on - strand, within GFF556at 597.411 kb on + strandat 597.411 kb on + strandat 597.411 kb on + strandat 597.411 kb on + strandat 597.412 kb on - strandat 597.412 kb on - strandat 597.412 kb on - strandat 597.479 kb on + strandat 597.479 kb on + strandat 597.479 kb on + strandat 597.480 kb on - strandat 597.480 kb on - strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.540 kb on - strandat 597.540 kb on - strandat 598.429 kb on + strand, within GFF557at 598.430 kb on - strand, within GFF557at 598.430 kb on - strand, within GFF557at 598.430 kb on - strand, within GFF557

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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595,966 + +0.3
596,061 + -0.3
596,061 + -0.5
596,061 + +0.5
596,061 + +0.2
596,244 + GFF555 0.32 +1.3
596,244 + GFF555 0.32 -1.3
596,245 - GFF555 0.32 +0.5
596,331 + GFF555 0.43 -0.3
596,331 + GFF555 0.43 -1.7
596,331 + GFF555 0.43 +0.7
596,331 + GFF555 0.43 -0.6
596,331 + GFF555 0.43 +0.6
596,331 + GFF555 0.43 +0.7
596,331 + GFF555 0.43 -0.3
596,331 + GFF555 0.43 -0.3
596,331 + GFF555 0.43 -1.0
596,331 + GFF555 0.43 -0.5
596,332 - GFF555 0.43 -1.3
596,332 - GFF555 0.43 -0.8
596,332 - GFF555 0.43 +0.5
596,332 - GFF555 0.43 +0.1
596,427 + GFF555 0.55 +0.1
596,427 + GFF555 0.55 -0.3
596,427 + GFF555 0.55 +0.0
596,427 + GFF555 0.55 -0.4
596,427 + GFF555 0.55 -0.3
596,428 - GFF555 0.55 +0.3
596,428 - GFF555 0.55 +0.5
596,428 - GFF555 0.55 -0.4
596,560 + GFF555 0.71 -0.6
596,560 + GFF555 0.71 -0.9
596,574 + GFF555 0.73 -2.3
596,574 + GFF555 0.73 +0.5
596,574 + GFF555 0.73 -0.3
596,575 - GFF555 0.73 -0.3
596,575 - GFF555 0.73 -0.7
596,575 - GFF555 0.73 -0.5
596,599 + GFF555 0.76 -0.1
596,599 + GFF555 0.76 -0.1
596,599 + GFF555 0.76 +0.2
596,599 + GFF555 0.76 -0.5
596,600 - GFF555 0.76 -0.9
596,600 - GFF555 0.76 -1.0
596,600 - GFF555 0.76 -0.3
596,643 + GFF555 0.82 -1.2
596,643 + GFF555 0.82 +0.2
596,644 - GFF555 0.82 -0.3
596,691 + GFF555 0.88 +0.2
596,691 + GFF555 0.88 +1.0
596,692 - GFF555 0.88 -0.5
596,692 - GFF555 0.88 -0.5
596,765 + +0.8
596,805 - +0.1
596,831 - +0.5
596,831 - +0.1
596,844 + -0.2
596,845 - +0.4
596,863 + -0.3
596,863 + +0.5
596,864 - -0.6
596,864 - -0.0
596,871 - -0.7
596,886 + -0.3
596,886 + +1.1
596,886 + -0.0
596,886 + -0.3
596,886 + -0.0
596,886 + +0.9
596,886 + -0.2
596,886 + +0.3
596,886 + -0.3
596,886 + -0.0
596,886 + -0.1
596,886 + -0.6
596,887 - -0.9
596,887 - -0.1
596,887 - -1.1
596,887 - -0.6
596,887 - +0.1
596,887 - +0.1
596,887 - -0.2
596,887 - -0.6
596,887 - -0.2
596,935 + GFF556 0.11 -0.2
596,935 + GFF556 0.11 -0.6
596,936 - GFF556 0.11 +1.3
596,952 + GFF556 0.14 -0.5
597,090 + GFF556 0.37 +0.0
597,090 + GFF556 0.37 -0.4
597,090 + GFF556 0.37 -1.7
597,090 + GFF556 0.37 +0.3
597,090 + GFF556 0.37 -0.4
597,091 - GFF556 0.37 +1.4
597,091 - GFF556 0.37 -0.6
597,091 - GFF556 0.37 +0.6
597,091 - GFF556 0.37 -0.7
597,147 + GFF556 0.46 +0.1
597,147 + GFF556 0.46 -0.7
597,147 + GFF556 0.46 +0.7
597,148 - GFF556 0.46 -0.5
597,148 - GFF556 0.46 -0.2
597,148 - GFF556 0.46 -0.7
597,148 - GFF556 0.46 -0.7
597,231 + GFF556 0.60 +1.3
597,232 - GFF556 0.60 -0.5
597,232 - GFF556 0.60 +0.4
597,232 - GFF556 0.60 +0.0
597,232 - GFF556 0.60 +0.6
597,232 - GFF556 0.60 +1.3
597,232 - GFF556 0.60 -0.6
597,411 + +0.1
597,411 + +1.7
597,411 + -0.2
597,411 + -0.4
597,412 - -0.3
597,412 - +0.4
597,412 - +0.2
597,479 + -1.2
597,479 + +1.1
597,479 + -0.4
597,480 - -0.8
597,480 - -0.5
597,539 + +0.2
597,539 + -0.9
597,539 + -0.0
597,539 + -1.0
597,539 + +0.5
597,539 + -0.9
597,539 + +0.5
597,539 + +1.0
597,539 + +0.1
597,539 + -0.7
597,539 + -0.0
597,539 + -0.7
597,539 + -0.1
597,539 + +0.1
597,540 - -0.5
597,540 - -0.0
598,429 + GFF557 0.31 -1.0
598,430 - GFF557 0.31 +0.7
598,430 - GFF557 0.31 -2.6
598,430 - GFF557 0.31 +0.2

Or see this region's nucleotide sequence