Strain Fitness in Variovorax sp. SCN45 around GFF5530

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5528 and GFF5529 overlap by 4 nucleotidesGFF5529 and GFF5530 are separated by 18 nucleotidesGFF5530 and GFF5531 are separated by 107 nucleotidesGFF5531 and GFF5532 are separated by 69 nucleotides GFF5528 - Conjugative transfer protein TrbL, at 158,320 to 158,799 GFF5528 GFF5529 - Putative outer membrane protein, at 158,796 to 159,599 GFF5529 GFF5530 - FIG00931903: hypothetical protein, at 159,618 to 160,655 GFF5530 GFF5531 - hypothetical protein, at 160,763 to 161,158 GFF5531 GFF5532 - Putative oxidoreductase, at 161,228 to 162,010 GFF5532 Position (kb) 159 160 161Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 158.779 kb on + strandat 158.779 kb on + strandat 158.779 kb on + strandat 158.779 kb on + strandat 158.779 kb on + strandat 158.780 kb on - strandat 158.780 kb on - strandat 158.780 kb on - strandat 158.780 kb on - strandat 158.780 kb on - strandat 159.012 kb on + strand, within GFF5529at 159.012 kb on + strand, within GFF5529at 159.012 kb on + strand, within GFF5529at 159.012 kb on + strand, within GFF5529at 159.012 kb on + strand, within GFF5529at 159.012 kb on + strand, within GFF5529at 159.012 kb on + strand, within GFF5529at 159.012 kb on + strand, within GFF5529at 159.013 kb on - strand, within GFF5529at 159.013 kb on - strand, within GFF5529at 159.013 kb on - strand, within GFF5529at 159.013 kb on - strand, within GFF5529at 159.013 kb on - strand, within GFF5529at 159.013 kb on - strand, within GFF5529at 159.024 kb on + strand, within GFF5529at 159.045 kb on + strand, within GFF5529at 159.045 kb on + strand, within GFF5529at 159.045 kb on + strand, within GFF5529at 159.045 kb on + strand, within GFF5529at 159.045 kb on + strand, within GFF5529at 159.045 kb on + strand, within GFF5529at 159.045 kb on + strand, within GFF5529at 159.045 kb on + strand, within GFF5529at 159.045 kb on + strand, within GFF5529at 159.046 kb on - strand, within GFF5529at 159.046 kb on - strand, within GFF5529at 159.117 kb on + strand, within GFF5529at 159.117 kb on + strand, within GFF5529at 159.117 kb on + strand, within GFF5529at 159.118 kb on - strand, within GFF5529at 159.163 kb on - strand, within GFF5529at 159.264 kb on + strand, within GFF5529at 159.264 kb on + strand, within GFF5529at 159.264 kb on + strand, within GFF5529at 159.264 kb on + strand, within GFF5529at 159.265 kb on - strand, within GFF5529at 159.265 kb on - strand, within GFF5529at 159.265 kb on - strand, within GFF5529at 159.279 kb on + strand, within GFF5529at 159.279 kb on + strand, within GFF5529at 159.279 kb on + strand, within GFF5529at 159.279 kb on + strand, within GFF5529at 159.279 kb on + strand, within GFF5529at 159.279 kb on + strand, within GFF5529at 159.279 kb on + strand, within GFF5529at 159.279 kb on + strand, within GFF5529at 159.280 kb on - strand, within GFF5529at 159.280 kb on - strand, within GFF5529at 159.297 kb on + strand, within GFF5529at 159.297 kb on + strand, within GFF5529at 159.297 kb on + strand, within GFF5529at 159.297 kb on + strand, within GFF5529at 159.298 kb on - strand, within GFF5529at 159.298 kb on - strand, within GFF5529at 159.298 kb on - strand, within GFF5529at 159.298 kb on - strand, within GFF5529at 159.298 kb on - strand, within GFF5529at 159.298 kb on - strand, within GFF5529at 159.298 kb on - strand, within GFF5529at 159.402 kb on + strand, within GFF5529at 159.402 kb on + strand, within GFF5529at 159.402 kb on + strand, within GFF5529at 159.424 kb on + strand, within GFF5529at 159.424 kb on + strand, within GFF5529at 159.425 kb on - strand, within GFF5529at 159.856 kb on + strand, within GFF5530at 159.856 kb on + strand, within GFF5530at 159.856 kb on + strand, within GFF5530at 159.856 kb on + strand, within GFF5530at 159.856 kb on + strand, within GFF5530at 159.856 kb on + strand, within GFF5530at 159.857 kb on - strand, within GFF5530at 159.857 kb on - strand, within GFF5530at 159.857 kb on - strand, within GFF5530at 159.857 kb on - strand, within GFF5530at 159.857 kb on - strand, within GFF5530at 160.137 kb on + strand, within GFF5530at 160.239 kb on + strand, within GFF5530at 160.239 kb on + strand, within GFF5530at 160.239 kb on + strand, within GFF5530at 160.239 kb on + strand, within GFF5530at 160.239 kb on + strand, within GFF5530at 160.240 kb on - strand, within GFF5530at 160.240 kb on - strand, within GFF5530at 160.240 kb on - strand, within GFF5530at 160.240 kb on - strand, within GFF5530at 160.240 kb on - strand, within GFF5530at 160.305 kb on + strand, within GFF5530at 160.305 kb on + strand, within GFF5530at 160.305 kb on + strand, within GFF5530at 160.306 kb on - strand, within GFF5530at 160.306 kb on - strand, within GFF5530at 160.306 kb on - strand, within GFF5530at 160.317 kb on + strand, within GFF5530at 160.317 kb on + strand, within GFF5530at 160.318 kb on - strand, within GFF5530at 160.318 kb on - strand, within GFF5530at 160.326 kb on + strand, within GFF5530at 160.326 kb on + strand, within GFF5530at 160.326 kb on + strand, within GFF5530at 160.326 kb on + strand, within GFF5530at 160.326 kb on + strand, within GFF5530at 160.327 kb on - strand, within GFF5530at 160.327 kb on - strand, within GFF5530at 160.335 kb on + strand, within GFF5530at 160.335 kb on + strand, within GFF5530at 160.335 kb on + strand, within GFF5530at 160.335 kb on + strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.375 kb on - strand, within GFF5530at 160.375 kb on - strand, within GFF5530at 160.398 kb on + strand, within GFF5530at 160.398 kb on + strand, within GFF5530at 160.461 kb on + strand, within GFF5530at 160.461 kb on + strand, within GFF5530at 160.461 kb on + strand, within GFF5530at 160.461 kb on + strand, within GFF5530at 160.462 kb on - strand, within GFF5530at 160.462 kb on - strand, within GFF5530at 160.462 kb on - strand, within GFF5530at 160.653 kb on + strandat 160.653 kb on + strandat 160.653 kb on + strandat 160.653 kb on + strandat 160.654 kb on - strandat 160.700 kb on + strandat 160.700 kb on + strandat 160.701 kb on - strandat 160.701 kb on - strandat 160.701 kb on - strandat 160.725 kb on + strandat 160.725 kb on + strandat 160.725 kb on + strandat 160.725 kb on + strandat 160.725 kb on + strandat 160.725 kb on + strandat 160.725 kb on + strandat 160.725 kb on + strandat 160.725 kb on + strandat 160.725 kb on + strandat 160.725 kb on + strandat 160.725 kb on + strandat 160.725 kb on + strandat 160.726 kb on - strandat 160.726 kb on - strandat 160.726 kb on - strandat 160.726 kb on - strandat 160.726 kb on - strandat 160.726 kb on - strandat 160.757 kb on + strandat 160.757 kb on + strandat 160.757 kb on + strandat 160.757 kb on + strandat 160.757 kb on + strandat 160.757 kb on + strandat 160.757 kb on + strandat 160.758 kb on - strandat 160.758 kb on - strandat 160.758 kb on - strandat 160.758 kb on - strandat 160.758 kb on - strandat 160.758 kb on - strandat 160.758 kb on - strandat 161.048 kb on + strand, within GFF5531at 161.049 kb on - strand, within GFF5531at 161.049 kb on - strand, within GFF5531at 161.253 kb on + strandat 161.253 kb on + strandat 161.253 kb on + strandat 161.253 kb on + strandat 161.253 kb on + strandat 161.253 kb on + strandat 161.253 kb on + strandat 161.253 kb on + strandat 161.253 kb on + strandat 161.253 kb on + strandat 161.253 kb on + strandat 161.254 kb on - strandat 161.254 kb on - strandat 161.254 kb on - strandat 161.254 kb on - strandat 161.254 kb on - strandat 161.254 kb on - strandat 161.254 kb on - strandat 161.431 kb on - strand, within GFF5532at 161.511 kb on + strand, within GFF5532at 161.511 kb on + strand, within GFF5532at 161.511 kb on + strand, within GFF5532at 161.512 kb on - strand, within GFF5532at 161.512 kb on - strand, within GFF5532at 161.512 kb on - strand, within GFF5532at 161.512 kb on - strand, within GFF5532at 161.512 kb on - strand, within GFF5532at 161.520 kb on + strand, within GFF5532

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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158,779 + -0.6
158,779 + +0.4
158,779 + -0.3
158,779 + +1.4
158,779 + -0.8
158,780 - -1.6
158,780 - -0.8
158,780 - +1.2
158,780 - +0.0
158,780 - -0.3
159,012 + GFF5529 0.27 +0.7
159,012 + GFF5529 0.27 -1.9
159,012 + GFF5529 0.27 -1.1
159,012 + GFF5529 0.27 -0.1
159,012 + GFF5529 0.27 +0.8
159,012 + GFF5529 0.27 -0.0
159,012 + GFF5529 0.27 +0.2
159,012 + GFF5529 0.27 -0.0
159,013 - GFF5529 0.27 -1.1
159,013 - GFF5529 0.27 -0.3
159,013 - GFF5529 0.27 +0.1
159,013 - GFF5529 0.27 +0.6
159,013 - GFF5529 0.27 -0.8
159,013 - GFF5529 0.27 -0.5
159,024 + GFF5529 0.28 -0.2
159,045 + GFF5529 0.31 -0.5
159,045 + GFF5529 0.31 -0.5
159,045 + GFF5529 0.31 +0.1
159,045 + GFF5529 0.31 -0.3
159,045 + GFF5529 0.31 -0.8
159,045 + GFF5529 0.31 -0.2
159,045 + GFF5529 0.31 -0.0
159,045 + GFF5529 0.31 +0.2
159,045 + GFF5529 0.31 -0.5
159,046 - GFF5529 0.31 -0.1
159,046 - GFF5529 0.31 +0.1
159,117 + GFF5529 0.40 -0.3
159,117 + GFF5529 0.40 -1.2
159,117 + GFF5529 0.40 +0.3
159,118 - GFF5529 0.40 -0.2
159,163 - GFF5529 0.46 +0.5
159,264 + GFF5529 0.58 -1.6
159,264 + GFF5529 0.58 -1.2
159,264 + GFF5529 0.58 +0.9
159,264 + GFF5529 0.58 +0.2
159,265 - GFF5529 0.58 -0.8
159,265 - GFF5529 0.58 -0.9
159,265 - GFF5529 0.58 +0.5
159,279 + GFF5529 0.60 +0.1
159,279 + GFF5529 0.60 -0.4
159,279 + GFF5529 0.60 -0.7
159,279 + GFF5529 0.60 +1.1
159,279 + GFF5529 0.60 -0.1
159,279 + GFF5529 0.60 -0.1
159,279 + GFF5529 0.60 +0.8
159,279 + GFF5529 0.60 -0.4
159,280 - GFF5529 0.60 +0.2
159,280 - GFF5529 0.60 +0.4
159,297 + GFF5529 0.62 -0.5
159,297 + GFF5529 0.62 -0.2
159,297 + GFF5529 0.62 -0.0
159,297 + GFF5529 0.62 +0.7
159,298 - GFF5529 0.62 -0.5
159,298 - GFF5529 0.62 +1.2
159,298 - GFF5529 0.62 +0.2
159,298 - GFF5529 0.62 +0.6
159,298 - GFF5529 0.62 +0.3
159,298 - GFF5529 0.62 -0.5
159,298 - GFF5529 0.62 -0.3
159,402 + GFF5529 0.75 -0.6
159,402 + GFF5529 0.75 +0.0
159,402 + GFF5529 0.75 -1.1
159,424 + GFF5529 0.78 -0.4
159,424 + GFF5529 0.78 -0.5
159,425 - GFF5529 0.78 -1.0
159,856 + GFF5530 0.23 -0.3
159,856 + GFF5530 0.23 -0.3
159,856 + GFF5530 0.23 -0.3
159,856 + GFF5530 0.23 -0.6
159,856 + GFF5530 0.23 -0.0
159,856 + GFF5530 0.23 -0.4
159,857 - GFF5530 0.23 +1.0
159,857 - GFF5530 0.23 -1.2
159,857 - GFF5530 0.23 +0.4
159,857 - GFF5530 0.23 +0.8
159,857 - GFF5530 0.23 -0.5
160,137 + GFF5530 0.50 +0.4
160,239 + GFF5530 0.60 -0.3
160,239 + GFF5530 0.60 +0.2
160,239 + GFF5530 0.60 +0.5
160,239 + GFF5530 0.60 +0.2
160,239 + GFF5530 0.60 +0.1
160,240 - GFF5530 0.60 -0.6
160,240 - GFF5530 0.60 -0.2
160,240 - GFF5530 0.60 +1.1
160,240 - GFF5530 0.60 +0.6
160,240 - GFF5530 0.60 -0.4
160,305 + GFF5530 0.66 +0.3
160,305 + GFF5530 0.66 +0.3
160,305 + GFF5530 0.66 +0.1
160,306 - GFF5530 0.66 -0.4
160,306 - GFF5530 0.66 +0.1
160,306 - GFF5530 0.66 -0.4
160,317 + GFF5530 0.67 -0.6
160,317 + GFF5530 0.67 -1.6
160,318 - GFF5530 0.67 +1.5
160,318 - GFF5530 0.67 +0.2
160,326 + GFF5530 0.68 +0.2
160,326 + GFF5530 0.68 +0.7
160,326 + GFF5530 0.68 +0.2
160,326 + GFF5530 0.68 -0.3
160,326 + GFF5530 0.68 +0.6
160,327 - GFF5530 0.68 -0.4
160,327 - GFF5530 0.68 -0.3
160,335 + GFF5530 0.69 +0.0
160,335 + GFF5530 0.69 -0.9
160,335 + GFF5530 0.69 +1.0
160,335 + GFF5530 0.69 -0.2
160,336 - GFF5530 0.69 -0.7
160,336 - GFF5530 0.69 +1.2
160,336 - GFF5530 0.69 +0.4
160,336 - GFF5530 0.69 -0.2
160,336 - GFF5530 0.69 +0.8
160,336 - GFF5530 0.69 -0.5
160,336 - GFF5530 0.69 +0.1
160,336 - GFF5530 0.69 +0.5
160,336 - GFF5530 0.69 -0.6
160,336 - GFF5530 0.69 +0.7
160,375 - GFF5530 0.73 -1.9
160,375 - GFF5530 0.73 +0.7
160,398 + GFF5530 0.75 +0.3
160,398 + GFF5530 0.75 +0.2
160,461 + GFF5530 0.81 -1.5
160,461 + GFF5530 0.81 -0.4
160,461 + GFF5530 0.81 +0.1
160,461 + GFF5530 0.81 -0.3
160,462 - GFF5530 0.81 +0.6
160,462 - GFF5530 0.81 -0.1
160,462 - GFF5530 0.81 -2.0
160,653 + +0.1
160,653 + -0.2
160,653 + +0.2
160,653 + +1.1
160,654 - -0.1
160,700 + +0.8
160,700 + -0.1
160,701 - +0.1
160,701 - -1.0
160,701 - -0.2
160,725 + +0.0
160,725 + -0.2
160,725 + +0.7
160,725 + +0.6
160,725 + +0.5
160,725 + -0.1
160,725 + +0.1
160,725 + -0.6
160,725 + +1.3
160,725 + +0.1
160,725 + -1.2
160,725 + -0.3
160,725 + -0.2
160,726 - -0.4
160,726 - -1.0
160,726 - -0.3
160,726 - +2.8
160,726 - -0.1
160,726 - +0.8
160,757 + -1.1
160,757 + +0.4
160,757 + +0.0
160,757 + -1.0
160,757 + -1.1
160,757 + +0.4
160,757 + -0.2
160,758 - -0.6
160,758 - -0.3
160,758 - -0.0
160,758 - +0.4
160,758 - +0.6
160,758 - -0.3
160,758 - -0.2
161,048 + GFF5531 0.72 -0.5
161,049 - GFF5531 0.72 +0.0
161,049 - GFF5531 0.72 -0.9
161,253 + -1.1
161,253 + +0.2
161,253 + -0.5
161,253 + -0.3
161,253 + -1.5
161,253 + -2.0
161,253 + -0.2
161,253 + -0.3
161,253 + +0.3
161,253 + -0.2
161,253 + -0.2
161,254 - -0.3
161,254 - -0.3
161,254 - -0.3
161,254 - -0.4
161,254 - +0.1
161,254 - -0.0
161,254 - -3.0
161,431 - GFF5532 0.26 -1.3
161,511 + GFF5532 0.36 +0.2
161,511 + GFF5532 0.36 -0.1
161,511 + GFF5532 0.36 -0.3
161,512 - GFF5532 0.36 -1.9
161,512 - GFF5532 0.36 -0.2
161,512 - GFF5532 0.36 +0.2
161,512 - GFF5532 0.36 -0.1
161,512 - GFF5532 0.36 +0.2
161,520 + GFF5532 0.37 +1.8

Or see this region's nucleotide sequence