Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5458 and GFF5459 are separated by 5 nucleotides GFF5459 and GFF5460 overlap by 4 nucleotides GFF5460 and GFF5461 are separated by 12 nucleotides
GFF5458 - D-erythronate dehydrogenase (NAD+), at 88,797 to 89,813
GFF5458
GFF5459 - 3-oxo-tetronate kinase, at 89,819 to 91,090
GFF5459
GFF5460 - 3-oxo-tetronate 4-phosphate decarboxylase, at 91,087 to 91,752
GFF5460
GFF5461 - 2-dehydrotetronate isomerase (EC 5.3.1.35), at 91,765 to 92,583
GFF5461
Position (kb) 89
90
91
92 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 89.263 kb on - strand, within GFF5458 at 89.263 kb on - strand, within GFF5458 at 89.263 kb on - strand, within GFF5458 at 89.764 kb on - strand at 89.764 kb on - strand at 89.764 kb on - strand at 90.062 kb on + strand, within GFF5459 at 90.062 kb on + strand, within GFF5459 at 90.062 kb on + strand, within GFF5459 at 90.062 kb on + strand, within GFF5459 at 90.062 kb on + strand, within GFF5459 at 90.062 kb on + strand, within GFF5459 at 90.062 kb on + strand, within GFF5459 at 90.062 kb on + strand, within GFF5459 at 90.062 kb on + strand, within GFF5459 at 90.063 kb on - strand, within GFF5459 at 90.063 kb on - strand, within GFF5459 at 90.063 kb on - strand, within GFF5459 at 90.071 kb on + strand, within GFF5459 at 90.071 kb on + strand, within GFF5459 at 90.072 kb on - strand, within GFF5459 at 90.163 kb on + strand, within GFF5459 at 90.164 kb on - strand, within GFF5459 at 90.164 kb on - strand, within GFF5459 at 90.206 kb on + strand, within GFF5459 at 90.206 kb on + strand, within GFF5459 at 90.207 kb on - strand, within GFF5459 at 90.207 kb on - strand, within GFF5459 at 90.207 kb on - strand, within GFF5459 at 90.207 kb on - strand, within GFF5459 at 90.336 kb on - strand, within GFF5459 at 90.753 kb on - strand, within GFF5459 at 91.075 kb on + strand at 91.075 kb on + strand at 91.075 kb on + strand at 91.075 kb on + strand at 91.075 kb on + strand at 91.075 kb on + strand at 91.075 kb on + strand at 91.075 kb on + strand at 91.075 kb on + strand at 91.075 kb on + strand at 91.076 kb on - strand at 91.076 kb on - strand at 91.076 kb on - strand at 91.076 kb on - strand at 91.150 kb on + strand at 91.151 kb on - strand at 91.313 kb on + strand, within GFF5460 at 91.327 kb on + strand, within GFF5460 at 91.328 kb on - strand, within GFF5460 at 91.447 kb on + strand, within GFF5460 at 91.447 kb on + strand, within GFF5460 at 91.447 kb on + strand, within GFF5460 at 91.448 kb on - strand, within GFF5460 at 91.753 kb on + strand at 91.753 kb on + strand at 91.754 kb on - strand at 91.754 kb on - strand at 91.864 kb on + strand, within GFF5461 at 91.864 kb on + strand, within GFF5461 at 91.864 kb on + strand, within GFF5461 at 91.864 kb on + strand, within GFF5461 at 91.865 kb on - strand, within GFF5461 at 91.865 kb on - strand, within GFF5461 at 91.865 kb on - strand, within GFF5461 at 91.876 kb on + strand, within GFF5461
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 89,263 - GFF5458 0.46 +0.2 89,263 - GFF5458 0.46 -0.2 89,263 - GFF5458 0.46 -0.8 89,764 - -2.8 89,764 - -0.1 89,764 - +0.8 90,062 + GFF5459 0.19 -0.2 90,062 + GFF5459 0.19 +0.0 90,062 + GFF5459 0.19 +0.3 90,062 + GFF5459 0.19 +0.1 90,062 + GFF5459 0.19 +0.6 90,062 + GFF5459 0.19 -0.8 90,062 + GFF5459 0.19 +0.2 90,062 + GFF5459 0.19 -0.6 90,062 + GFF5459 0.19 -0.3 90,063 - GFF5459 0.19 -0.8 90,063 - GFF5459 0.19 -0.1 90,063 - GFF5459 0.19 -0.3 90,071 + GFF5459 0.20 -0.9 90,071 + GFF5459 0.20 +0.6 90,072 - GFF5459 0.20 +0.7 90,163 + GFF5459 0.27 -0.5 90,164 - GFF5459 0.27 -0.2 90,164 - GFF5459 0.27 +2.2 90,206 + GFF5459 0.30 +0.3 90,206 + GFF5459 0.30 +0.1 90,207 - GFF5459 0.31 -0.2 90,207 - GFF5459 0.31 -0.8 90,207 - GFF5459 0.31 +1.4 90,207 - GFF5459 0.31 -0.8 90,336 - GFF5459 0.41 +0.2 90,753 - GFF5459 0.73 +0.6 91,075 + +0.1 91,075 + -0.1 91,075 + +0.2 91,075 + -0.3 91,075 + -0.7 91,075 + -0.8 91,075 + -0.5 91,075 + -0.5 91,075 + -0.4 91,075 + -0.1 91,076 - -0.3 91,076 - +0.4 91,076 - -1.2 91,076 - -0.2 91,150 + -0.3 91,151 - -0.1 91,313 + GFF5460 0.34 -1.5 91,327 + GFF5460 0.36 -0.1 91,328 - GFF5460 0.36 -1.5 91,447 + GFF5460 0.54 -0.2 91,447 + GFF5460 0.54 -1.0 91,447 + GFF5460 0.54 -0.7 91,448 - GFF5460 0.54 +0.8 91,753 + +0.3 91,753 + +0.3 91,754 - -1.2 91,754 - -1.4 91,864 + GFF5461 0.12 -0.4 91,864 + GFF5461 0.12 -0.4 91,864 + GFF5461 0.12 +1.0 91,864 + GFF5461 0.12 -0.3 91,865 - GFF5461 0.12 -0.7 91,865 - GFF5461 0.12 +0.3 91,865 - GFF5461 0.12 -0.7 91,876 + GFF5461 0.14 +0.2
Or see this region's nucleotide sequence