Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5315 and GFF5316 overlap by 4 nucleotides GFF5316 and GFF5317 are separated by 63 nucleotides GFF5317 and GFF5318 are separated by 9 nucleotides
GFF5315 - Diaminopimelate decarboxylase (EC 4.1.1.20), at 192,174 to 193,463
GFF5315
GFF5316 - Diaminopimelate decarboxylase and/or diaminopimelate epimerase leader peptide, at 193,460 to 193,687
GFF5316
GFF5317 - Frataxin homolog CyaY, facilitates Fe-S cluster assembly, interacts with IscS, at 193,751 to 194,083
GFF5317
GFF5318 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 194,093 to 196,504
GFF5318
Position (kb) 193
194
195 Strain fitness (log2 ratio) -2
-1
0
1
2 at 193.627 kb on - strand, within GFF5316 at 193.716 kb on - strand at 193.716 kb on - strand at 193.738 kb on + strand at 193.739 kb on - strand at 193.749 kb on + strand at 193.750 kb on - strand at 193.750 kb on - strand at 193.766 kb on + strand at 193.766 kb on + strand at 193.766 kb on + strand at 193.766 kb on + strand at 193.766 kb on + strand at 193.767 kb on - strand at 193.767 kb on - strand at 193.767 kb on - strand at 193.767 kb on - strand at 193.767 kb on - strand at 193.767 kb on - strand at 193.767 kb on - strand at 193.767 kb on - strand at 193.767 kb on - strand at 193.767 kb on - strand at 193.767 kb on - strand at 193.962 kb on - strand, within GFF5317 at 193.968 kb on - strand, within GFF5317 at 194.232 kb on + strand at 194.232 kb on + strand at 194.233 kb on - strand at 194.241 kb on + strand at 194.241 kb on + strand at 194.241 kb on + strand at 194.241 kb on + strand at 194.241 kb on + strand at 194.241 kb on + strand at 194.241 kb on + strand at 194.241 kb on + strand at 194.242 kb on - strand at 194.242 kb on - strand at 194.242 kb on - strand at 194.242 kb on - strand at 194.242 kb on - strand at 194.242 kb on - strand at 194.242 kb on - strand at 194.244 kb on + strand at 194.244 kb on + strand at 194.244 kb on + strand at 194.244 kb on + strand at 194.244 kb on + strand at 194.245 kb on - strand at 194.331 kb on + strand at 194.331 kb on + strand at 194.331 kb on + strand at 194.331 kb on + strand at 194.331 kb on + strand at 194.331 kb on + strand at 194.331 kb on + strand at 194.331 kb on + strand at 194.331 kb on + strand at 194.331 kb on + strand at 194.332 kb on - strand at 194.332 kb on - strand at 194.332 kb on - strand at 194.332 kb on - strand at 194.332 kb on - strand at 194.332 kb on - strand at 194.332 kb on - strand at 194.332 kb on - strand at 194.332 kb on - strand at 194.332 kb on - strand at 194.332 kb on - strand at 194.401 kb on - strand, within GFF5318 at 194.487 kb on + strand, within GFF5318 at 194.488 kb on - strand, within GFF5318 at 194.488 kb on - strand, within GFF5318 at 194.673 kb on + strand, within GFF5318 at 194.674 kb on - strand, within GFF5318 at 194.674 kb on - strand, within GFF5318 at 194.674 kb on - strand, within GFF5318 at 194.688 kb on + strand, within GFF5318 at 194.769 kb on + strand, within GFF5318 at 194.769 kb on + strand, within GFF5318 at 194.769 kb on + strand, within GFF5318 at 194.770 kb on - strand, within GFF5318 at 194.823 kb on + strand, within GFF5318 at 194.823 kb on + strand, within GFF5318 at 194.824 kb on - strand, within GFF5318 at 194.824 kb on - strand, within GFF5318 at 194.824 kb on - strand, within GFF5318 at 194.911 kb on - strand, within GFF5318 at 194.922 kb on + strand, within GFF5318 at 194.922 kb on + strand, within GFF5318 at 194.922 kb on + strand, within GFF5318 at 194.923 kb on - strand, within GFF5318 at 194.923 kb on - strand, within GFF5318 at 194.923 kb on - strand, within GFF5318 at 194.923 kb on - strand, within GFF5318 at 194.923 kb on - strand, within GFF5318 at 194.923 kb on - strand, within GFF5318 at 194.923 kb on - strand, within GFF5318 at 195.030 kb on + strand, within GFF5318 at 195.031 kb on - strand, within GFF5318 at 195.031 kb on - strand, within GFF5318 at 195.031 kb on - strand, within GFF5318 at 195.031 kb on - strand, within GFF5318 at 195.031 kb on - strand, within GFF5318 at 195.031 kb on - strand, within GFF5318 at 195.031 kb on - strand, within GFF5318 at 195.031 kb on - strand, within GFF5318 at 195.031 kb on - strand, within GFF5318
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 193,627 - GFF5316 0.73 -1.1 193,716 - -0.6 193,716 - +1.7 193,738 + +0.3 193,739 - +1.2 193,749 + +0.3 193,750 - -0.0 193,750 - -0.4 193,766 + -2.2 193,766 + -0.6 193,766 + +0.4 193,766 + -2.6 193,766 + -1.3 193,767 - -1.0 193,767 - -0.0 193,767 - -0.6 193,767 - -0.5 193,767 - -1.5 193,767 - -1.6 193,767 - -0.2 193,767 - -1.2 193,767 - -1.5 193,767 - -1.1 193,767 - -0.8 193,962 - GFF5317 0.63 -0.8 193,968 - GFF5317 0.65 -0.6 194,232 + +0.0 194,232 + +2.5 194,233 - -0.3 194,241 + -0.4 194,241 + +0.7 194,241 + -0.6 194,241 + -1.1 194,241 + -0.4 194,241 + -0.8 194,241 + +0.7 194,241 + -0.9 194,242 - -0.6 194,242 - +0.7 194,242 - -1.0 194,242 - +0.8 194,242 - +0.2 194,242 - -1.4 194,242 - -0.5 194,244 + -0.1 194,244 + +0.3 194,244 + +0.5 194,244 + +0.7 194,244 + +1.7 194,245 - +0.5 194,331 + -1.2 194,331 + -0.3 194,331 + -0.6 194,331 + -0.6 194,331 + -0.3 194,331 + -2.1 194,331 + -0.7 194,331 + -0.2 194,331 + -0.5 194,331 + -0.6 194,332 - -0.7 194,332 - -0.9 194,332 - -0.3 194,332 - -1.6 194,332 - -1.1 194,332 - -1.1 194,332 - +0.3 194,332 - -0.8 194,332 - -1.7 194,332 - -1.5 194,332 - -0.2 194,401 - GFF5318 0.13 -0.2 194,487 + GFF5318 0.16 -0.5 194,488 - GFF5318 0.16 -0.8 194,488 - GFF5318 0.16 -1.2 194,673 + GFF5318 0.24 -2.1 194,674 - GFF5318 0.24 -0.9 194,674 - GFF5318 0.24 -0.6 194,674 - GFF5318 0.24 -0.6 194,688 + GFF5318 0.25 +0.5 194,769 + GFF5318 0.28 -0.6 194,769 + GFF5318 0.28 -0.4 194,769 + GFF5318 0.28 +0.5 194,770 - GFF5318 0.28 -0.6 194,823 + GFF5318 0.30 -1.2 194,823 + GFF5318 0.30 +0.4 194,824 - GFF5318 0.30 -1.1 194,824 - GFF5318 0.30 -1.3 194,824 - GFF5318 0.30 +0.4 194,911 - GFF5318 0.34 -0.4 194,922 + GFF5318 0.34 -0.6 194,922 + GFF5318 0.34 -0.5 194,922 + GFF5318 0.34 -0.7 194,923 - GFF5318 0.34 -0.2 194,923 - GFF5318 0.34 +0.2 194,923 - GFF5318 0.34 +0.7 194,923 - GFF5318 0.34 -2.0 194,923 - GFF5318 0.34 +2.7 194,923 - GFF5318 0.34 -0.9 194,923 - GFF5318 0.34 +1.1 195,030 + GFF5318 0.39 +0.1 195,031 - GFF5318 0.39 +0.7 195,031 - GFF5318 0.39 -0.5 195,031 - GFF5318 0.39 -0.1 195,031 - GFF5318 0.39 -0.4 195,031 - GFF5318 0.39 -0.3 195,031 - GFF5318 0.39 -1.0 195,031 - GFF5318 0.39 -1.2 195,031 - GFF5318 0.39 -0.8 195,031 - GFF5318 0.39 -0.4
Or see this region's nucleotide sequence