Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5234 and GFF5235 are separated by 58 nucleotides GFF5235 and GFF5236 are separated by 5 nucleotides GFF5236 and GFF5237 are separated by 10 nucleotides
GFF5234 - General secretion pathway protein E / Type II secretion cytoplasmic ATP binding protein (PulE, ATPase), at 99,105 to 100,496
GFF5234
GFF5235 - General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD), at 100,555 to 102,846
GFF5235
GFF5236 - General secretion pathway protein N, at 102,852 to 103,652
GFF5236
GFF5237 - General secretion pathway protein M, at 103,663 to 104,205
GFF5237
Position (kb) 100
101
102
103 Strain fitness (log2 ratio) -1
0
1 at 100.103 kb on - strand, within GFF5234 at 100.103 kb on - strand, within GFF5234 at 100.300 kb on + strand, within GFF5234 at 100.364 kb on - strand at 100.424 kb on - strand at 100.547 kb on + strand at 100.547 kb on + strand at 100.548 kb on - strand at 100.548 kb on - strand at 100.724 kb on - strand at 100.826 kb on + strand, within GFF5235 at 100.827 kb on - strand, within GFF5235 at 101.243 kb on + strand, within GFF5235 at 101.244 kb on - strand, within GFF5235 at 101.381 kb on + strand, within GFF5235 at 101.381 kb on + strand, within GFF5235 at 101.382 kb on - strand, within GFF5235 at 101.657 kb on + strand, within GFF5235 at 101.951 kb on + strand, within GFF5235 at 101.951 kb on + strand, within GFF5235 at 101.951 kb on + strand, within GFF5235 at 101.951 kb on + strand, within GFF5235 at 101.951 kb on + strand, within GFF5235 at 101.951 kb on + strand, within GFF5235 at 101.951 kb on + strand, within GFF5235 at 101.952 kb on - strand, within GFF5235 at 101.952 kb on - strand, within GFF5235 at 101.952 kb on - strand, within GFF5235 at 101.952 kb on - strand, within GFF5235 at 101.952 kb on - strand, within GFF5235 at 102.291 kb on - strand, within GFF5235 at 102.291 kb on - strand, within GFF5235 at 102.291 kb on - strand, within GFF5235 at 102.392 kb on + strand, within GFF5235 at 102.393 kb on - strand, within GFF5235 at 102.393 kb on - strand, within GFF5235 at 102.509 kb on + strand, within GFF5235 at 102.509 kb on + strand, within GFF5235 at 102.509 kb on + strand, within GFF5235 at 102.510 kb on - strand, within GFF5235 at 102.510 kb on - strand, within GFF5235 at 102.510 kb on - strand, within GFF5235 at 102.510 kb on - strand, within GFF5235 at 102.510 kb on - strand, within GFF5235 at 102.510 kb on - strand, within GFF5235 at 102.672 kb on + strand at 103.066 kb on + strand, within GFF5236
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 100,103 - GFF5234 0.72 +1.0 100,103 - GFF5234 0.72 -0.7 100,300 + GFF5234 0.86 +0.1 100,364 - +0.5 100,424 - +0.4 100,547 + -0.8 100,547 + +0.3 100,548 - -0.5 100,548 - +0.1 100,724 - -1.1 100,826 + GFF5235 0.12 -0.3 100,827 - GFF5235 0.12 -0.4 101,243 + GFF5235 0.30 -0.9 101,244 - GFF5235 0.30 -0.3 101,381 + GFF5235 0.36 -0.2 101,381 + GFF5235 0.36 -0.4 101,382 - GFF5235 0.36 +0.1 101,657 + GFF5235 0.48 -0.0 101,951 + GFF5235 0.61 -0.1 101,951 + GFF5235 0.61 -0.6 101,951 + GFF5235 0.61 -0.1 101,951 + GFF5235 0.61 +0.2 101,951 + GFF5235 0.61 +0.2 101,951 + GFF5235 0.61 -0.0 101,951 + GFF5235 0.61 +0.7 101,952 - GFF5235 0.61 +0.5 101,952 - GFF5235 0.61 +0.6 101,952 - GFF5235 0.61 -0.6 101,952 - GFF5235 0.61 -0.7 101,952 - GFF5235 0.61 -0.0 102,291 - GFF5235 0.76 +0.7 102,291 - GFF5235 0.76 +0.5 102,291 - GFF5235 0.76 +0.2 102,392 + GFF5235 0.80 -0.6 102,393 - GFF5235 0.80 -0.1 102,393 - GFF5235 0.80 -0.2 102,509 + GFF5235 0.85 +0.5 102,509 + GFF5235 0.85 +0.9 102,509 + GFF5235 0.85 +0.2 102,510 - GFF5235 0.85 +0.5 102,510 - GFF5235 0.85 -1.0 102,510 - GFF5235 0.85 +1.7 102,510 - GFF5235 0.85 +0.4 102,510 - GFF5235 0.85 +0.4 102,510 - GFF5235 0.85 +0.7 102,672 + +1.3 103,066 + GFF5236 0.27 +0.7
Or see this region's nucleotide sequence