Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5213 and GFF5214 are separated by 79 nucleotides GFF5214 and GFF5215 overlap by 19 nucleotides GFF5215 and GFF5216 are separated by 97 nucleotides GFF5216 and GFF5217 are separated by 249 nucleotides
GFF5213 - hypothetical protein, at 76,256 to 76,666
GFF5213
GFF5214 - 7-cyano-7-deazaguanine synthase (EC 6.3.4.20), at 76,746 to 77,450
GFF5214
GFF5215 - Efflux ABC transporter, permease/ATP-binding protein, at 77,432 to 79,234
GFF5215
GFF5216 - Metal dependent phosphohydrolase, at 79,332 to 79,892
GFF5216
GFF5217 - Ferric iron ABC transporter, iron-binding protein, at 80,142 to 81,176
GFF5217
Position (kb) 77
78
79
80 Strain fitness (log2 ratio) -2
-1
0
1 at 76.500 kb on + strand, within GFF5213 at 76.572 kb on + strand, within GFF5213 at 76.573 kb on - strand, within GFF5213 at 76.573 kb on - strand, within GFF5213 at 76.722 kb on + strand at 76.827 kb on + strand, within GFF5214 at 77.237 kb on - strand, within GFF5214 at 77.344 kb on - strand, within GFF5214 at 77.616 kb on + strand, within GFF5215 at 77.617 kb on - strand, within GFF5215 at 77.617 kb on - strand, within GFF5215 at 77.847 kb on + strand, within GFF5215 at 77.847 kb on + strand, within GFF5215 at 78.210 kb on + strand, within GFF5215 at 78.210 kb on + strand, within GFF5215 at 78.211 kb on - strand, within GFF5215 at 78.211 kb on - strand, within GFF5215 at 78.304 kb on - strand, within GFF5215 at 78.402 kb on + strand, within GFF5215 at 78.486 kb on + strand, within GFF5215 at 78.812 kb on - strand, within GFF5215 at 78.852 kb on + strand, within GFF5215 at 78.852 kb on + strand, within GFF5215 at 78.853 kb on - strand, within GFF5215 at 78.886 kb on - strand, within GFF5215 at 78.886 kb on - strand, within GFF5215 at 78.904 kb on + strand, within GFF5215 at 78.936 kb on + strand, within GFF5215 at 78.937 kb on - strand, within GFF5215 at 79.038 kb on + strand, within GFF5215 at 79.038 kb on + strand, within GFF5215 at 79.077 kb on + strand at 79.077 kb on + strand at 79.077 kb on + strand at 79.078 kb on - strand at 79.083 kb on + strand at 79.083 kb on + strand at 79.083 kb on + strand at 79.083 kb on + strand at 79.084 kb on - strand at 79.084 kb on - strand at 79.084 kb on - strand at 79.084 kb on - strand at 79.153 kb on - strand at 79.567 kb on + strand, within GFF5216 at 79.568 kb on - strand, within GFF5216 at 79.568 kb on - strand, within GFF5216 at 79.649 kb on - strand, within GFF5216 at 79.649 kb on - strand, within GFF5216 at 79.649 kb on - strand, within GFF5216 at 79.649 kb on - strand, within GFF5216 at 79.649 kb on - strand, within GFF5216 at 79.649 kb on - strand, within GFF5216 at 79.649 kb on - strand, within GFF5216 at 79.679 kb on + strand, within GFF5216 at 79.679 kb on + strand, within GFF5216 at 80.026 kb on - strand at 80.026 kb on - strand at 80.026 kb on - strand at 80.073 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 76,500 + GFF5213 0.59 -0.3 76,572 + GFF5213 0.77 -0.9 76,573 - GFF5213 0.77 +0.2 76,573 - GFF5213 0.77 -0.7 76,722 + -0.9 76,827 + GFF5214 0.11 -0.3 77,237 - GFF5214 0.70 +0.9 77,344 - GFF5214 0.85 +0.1 77,616 + GFF5215 0.10 -0.9 77,617 - GFF5215 0.10 -0.0 77,617 - GFF5215 0.10 +0.4 77,847 + GFF5215 0.23 -0.3 77,847 + GFF5215 0.23 +0.6 78,210 + GFF5215 0.43 -0.4 78,210 + GFF5215 0.43 -1.0 78,211 - GFF5215 0.43 +0.8 78,211 - GFF5215 0.43 -0.1 78,304 - GFF5215 0.48 -0.6 78,402 + GFF5215 0.54 +0.3 78,486 + GFF5215 0.58 +0.6 78,812 - GFF5215 0.77 -0.1 78,852 + GFF5215 0.79 +0.0 78,852 + GFF5215 0.79 -0.3 78,853 - GFF5215 0.79 -1.0 78,886 - GFF5215 0.81 -0.6 78,886 - GFF5215 0.81 -2.6 78,904 + GFF5215 0.82 +0.1 78,936 + GFF5215 0.83 -1.4 78,937 - GFF5215 0.83 -1.1 79,038 + GFF5215 0.89 +0.2 79,038 + GFF5215 0.89 -0.7 79,077 + +0.6 79,077 + -0.5 79,077 + +0.1 79,078 - -0.1 79,083 + +0.1 79,083 + -1.4 79,083 + +0.2 79,083 + +0.1 79,084 - -0.1 79,084 - -0.9 79,084 - -0.6 79,084 - +0.2 79,153 - -0.3 79,567 + GFF5216 0.42 +0.4 79,568 - GFF5216 0.42 -0.4 79,568 - GFF5216 0.42 +0.4 79,649 - GFF5216 0.57 -1.3 79,649 - GFF5216 0.57 +0.7 79,649 - GFF5216 0.57 +0.1 79,649 - GFF5216 0.57 -0.5 79,649 - GFF5216 0.57 -0.2 79,649 - GFF5216 0.57 -0.5 79,649 - GFF5216 0.57 +0.3 79,679 + GFF5216 0.62 -0.3 79,679 + GFF5216 0.62 -0.5 80,026 - +0.4 80,026 - -0.0 80,026 - -1.3 80,073 - -0.5
Or see this region's nucleotide sequence