Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5212 and GFF5213 are separated by 193 nucleotides GFF5213 and GFF5214 are separated by 79 nucleotides GFF5214 and GFF5215 overlap by 19 nucleotides
GFF5212 - Alkaline phosphatase (EC 3.1.3.1), at 74,599 to 76,062
GFF5212
GFF5213 - hypothetical protein, at 76,256 to 76,666
GFF5213
GFF5214 - 7-cyano-7-deazaguanine synthase (EC 6.3.4.20), at 76,746 to 77,450
GFF5214
GFF5215 - Efflux ABC transporter, permease/ATP-binding protein, at 77,432 to 79,234
GFF5215
Position (kb) 76
77 Strain fitness (log2 ratio) -1
0
1 at 75.329 kb on + strand, within GFF5212 at 75.330 kb on - strand, within GFF5212 at 75.330 kb on - strand, within GFF5212 at 75.335 kb on + strand, within GFF5212 at 75.410 kb on + strand, within GFF5212 at 75.662 kb on + strand, within GFF5212 at 75.663 kb on - strand, within GFF5212 at 75.675 kb on - strand, within GFF5212 at 75.803 kb on + strand, within GFF5212 at 75.803 kb on + strand, within GFF5212 at 75.803 kb on + strand, within GFF5212 at 75.803 kb on + strand, within GFF5212 at 75.804 kb on - strand, within GFF5212 at 75.869 kb on + strand, within GFF5212 at 75.870 kb on - strand, within GFF5212 at 75.870 kb on - strand, within GFF5212 at 75.870 kb on - strand, within GFF5212 at 76.091 kb on + strand at 76.092 kb on - strand at 76.392 kb on + strand, within GFF5213 at 76.393 kb on - strand, within GFF5213 at 76.393 kb on - strand, within GFF5213 at 76.500 kb on + strand, within GFF5213 at 76.572 kb on + strand, within GFF5213 at 76.573 kb on - strand, within GFF5213 at 76.573 kb on - strand, within GFF5213 at 76.722 kb on + strand at 76.827 kb on + strand, within GFF5214 at 77.237 kb on - strand, within GFF5214 at 77.344 kb on - strand, within GFF5214 at 77.616 kb on + strand, within GFF5215 at 77.617 kb on - strand, within GFF5215 at 77.617 kb on - strand, within GFF5215
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 75,329 + GFF5212 0.50 -0.6 75,330 - GFF5212 0.50 +0.1 75,330 - GFF5212 0.50 -0.2 75,335 + GFF5212 0.50 +0.4 75,410 + GFF5212 0.55 -1.7 75,662 + GFF5212 0.73 +1.7 75,663 - GFF5212 0.73 -0.6 75,675 - GFF5212 0.73 -0.2 75,803 + GFF5212 0.82 +0.0 75,803 + GFF5212 0.82 -0.9 75,803 + GFF5212 0.82 +0.4 75,803 + GFF5212 0.82 -0.6 75,804 - GFF5212 0.82 -0.5 75,869 + GFF5212 0.87 +0.7 75,870 - GFF5212 0.87 +0.1 75,870 - GFF5212 0.87 -0.5 75,870 - GFF5212 0.87 -0.5 76,091 + -0.6 76,092 - -0.4 76,392 + GFF5213 0.33 +1.7 76,393 - GFF5213 0.33 -0.0 76,393 - GFF5213 0.33 -1.1 76,500 + GFF5213 0.59 -0.3 76,572 + GFF5213 0.77 -0.9 76,573 - GFF5213 0.77 +0.2 76,573 - GFF5213 0.77 -0.7 76,722 + -0.9 76,827 + GFF5214 0.11 -0.3 77,237 - GFF5214 0.70 +0.9 77,344 - GFF5214 0.85 +0.1 77,616 + GFF5215 0.10 -0.9 77,617 - GFF5215 0.10 -0.0 77,617 - GFF5215 0.10 +0.4
Or see this region's nucleotide sequence