Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5208 and GFF5209 overlap by 4 nucleotides GFF5209 and GFF5210 are separated by 80 nucleotides GFF5210 and GFF5211 overlap by 4 nucleotides
GFF5208 - Efflux ABC transporter, permease/ATP-binding protein Reut_A2584, at 69,740 to 71,761
GFF5208
GFF5209 - DUF1854 domain-containing protein, at 71,758 to 72,240
GFF5209
GFF5210 - hypothetical protein, at 72,321 to 73,031
GFF5210
GFF5211 - Alkaline phosphatase (EC 3.1.3.1), at 73,028 to 74,566
GFF5211
Position (kb) 71
72
73 Strain fitness (log2 ratio) -2
-1
0
1 at 70.787 kb on + strand, within GFF5208 at 70.787 kb on + strand, within GFF5208 at 70.788 kb on - strand, within GFF5208 at 70.788 kb on - strand, within GFF5208 at 70.788 kb on - strand, within GFF5208 at 70.788 kb on - strand, within GFF5208 at 70.802 kb on + strand, within GFF5208 at 70.803 kb on - strand, within GFF5208 at 70.803 kb on - strand, within GFF5208 at 71.097 kb on - strand, within GFF5208 at 71.325 kb on - strand, within GFF5208 at 71.630 kb on + strand at 71.630 kb on + strand at 71.643 kb on - strand at 71.643 kb on - strand at 71.643 kb on - strand at 71.849 kb on + strand, within GFF5209 at 71.849 kb on + strand, within GFF5209 at 71.849 kb on + strand, within GFF5209 at 71.849 kb on + strand, within GFF5209 at 71.849 kb on + strand, within GFF5209 at 71.849 kb on + strand, within GFF5209 at 71.850 kb on - strand, within GFF5209 at 71.850 kb on - strand, within GFF5209 at 71.850 kb on - strand, within GFF5209 at 72.341 kb on - strand at 72.356 kb on - strand at 72.356 kb on - strand at 72.463 kb on + strand, within GFF5210 at 72.520 kb on + strand, within GFF5210
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 70,787 + GFF5208 0.52 -0.8 70,787 + GFF5208 0.52 -1.1 70,788 - GFF5208 0.52 -1.8 70,788 - GFF5208 0.52 -1.9 70,788 - GFF5208 0.52 +0.1 70,788 - GFF5208 0.52 -0.9 70,802 + GFF5208 0.53 -1.4 70,803 - GFF5208 0.53 -0.3 70,803 - GFF5208 0.53 -0.1 71,097 - GFF5208 0.67 -1.3 71,325 - GFF5208 0.78 -1.2 71,630 + -0.6 71,630 + -1.6 71,643 - -0.4 71,643 - +0.7 71,643 - -0.4 71,849 + GFF5209 0.19 -1.6 71,849 + GFF5209 0.19 -1.7 71,849 + GFF5209 0.19 -1.0 71,849 + GFF5209 0.19 -1.3 71,849 + GFF5209 0.19 -0.9 71,849 + GFF5209 0.19 -0.3 71,850 - GFF5209 0.19 -0.3 71,850 - GFF5209 0.19 +0.5 71,850 - GFF5209 0.19 +0.6 72,341 - -0.7 72,356 - -0.1 72,356 - -2.0 72,463 + GFF5210 0.20 -0.0 72,520 + GFF5210 0.28 -0.1
Or see this region's nucleotide sequence