Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5163 and GFF5164 are separated by 9 nucleotides GFF5164 and GFF5165 are separated by 9 nucleotides GFF5165 and GFF5166 are separated by 174 nucleotides GFF5166 and GFF5167 are separated by 66 nucleotides
GFF5163 - Soluble lytic murein transglycosylase (EC 4.2.2.n1), at 15,895 to 17,925
GFF5163
GFF5164 - 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2), at 17,935 to 18,552
GFF5164
GFF5165 - Transcriptional regulator, LysR family, at 18,562 to 19,545
GFF5165
GFF5166 - hypothetical protein, at 19,720 to 20,043
GFF5166
GFF5167 - BLUF domain protein, at 20,110 to 20,514
GFF5167
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.603 kb on + strand, within GFF5163 at 17.603 kb on + strand, within GFF5163 at 17.603 kb on + strand, within GFF5163 at 17.603 kb on + strand, within GFF5163 at 17.603 kb on + strand, within GFF5163 at 17.604 kb on - strand, within GFF5163 at 17.604 kb on - strand, within GFF5163 at 17.604 kb on - strand, within GFF5163 at 17.604 kb on - strand, within GFF5163 at 17.615 kb on + strand, within GFF5163 at 17.615 kb on + strand, within GFF5163 at 17.616 kb on - strand, within GFF5163 at 17.616 kb on - strand, within GFF5163 at 17.616 kb on - strand, within GFF5163 at 17.681 kb on + strand, within GFF5163 at 17.681 kb on + strand, within GFF5163 at 17.681 kb on + strand, within GFF5163 at 17.682 kb on - strand, within GFF5163 at 17.934 kb on + strand at 17.934 kb on + strand at 17.934 kb on + strand at 17.935 kb on - strand at 17.935 kb on - strand at 17.935 kb on - strand at 17.935 kb on - strand at 18.112 kb on + strand, within GFF5164 at 18.112 kb on + strand, within GFF5164 at 18.113 kb on - strand, within GFF5164 at 18.113 kb on - strand, within GFF5164 at 18.113 kb on - strand, within GFF5164 at 18.113 kb on - strand, within GFF5164 at 18.259 kb on + strand, within GFF5164 at 18.290 kb on - strand, within GFF5164 at 18.290 kb on - strand, within GFF5164 at 18.358 kb on + strand, within GFF5164 at 18.358 kb on + strand, within GFF5164 at 18.359 kb on - strand, within GFF5164 at 18.359 kb on - strand, within GFF5164 at 18.359 kb on - strand, within GFF5164 at 18.359 kb on - strand, within GFF5164 at 18.359 kb on - strand, within GFF5164 at 18.400 kb on + strand, within GFF5164 at 18.400 kb on + strand, within GFF5164 at 18.401 kb on - strand, within GFF5164 at 18.401 kb on - strand, within GFF5164 at 18.401 kb on - strand, within GFF5164 at 18.401 kb on - strand, within GFF5164 at 18.401 kb on - strand, within GFF5164 at 18.701 kb on + strand, within GFF5165 at 18.701 kb on + strand, within GFF5165 at 18.702 kb on - strand, within GFF5165 at 18.702 kb on - strand, within GFF5165 at 18.702 kb on - strand, within GFF5165 at 18.833 kb on + strand, within GFF5165 at 18.833 kb on + strand, within GFF5165 at 18.834 kb on - strand, within GFF5165 at 18.839 kb on + strand, within GFF5165 at 18.839 kb on + strand, within GFF5165 at 18.839 kb on + strand, within GFF5165 at 18.839 kb on + strand, within GFF5165 at 18.839 kb on + strand, within GFF5165 at 18.839 kb on + strand, within GFF5165 at 18.839 kb on + strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.848 kb on + strand, within GFF5165 at 18.848 kb on + strand, within GFF5165 at 18.848 kb on + strand, within GFF5165 at 18.849 kb on - strand, within GFF5165 at 18.849 kb on - strand, within GFF5165 at 18.849 kb on - strand, within GFF5165 at 18.849 kb on - strand, within GFF5165 at 19.157 kb on - strand, within GFF5165 at 19.264 kb on + strand, within GFF5165 at 19.265 kb on - strand, within GFF5165 at 19.265 kb on - strand, within GFF5165 at 19.265 kb on - strand, within GFF5165 at 19.265 kb on - strand, within GFF5165 at 19.265 kb on - strand, within GFF5165 at 19.265 kb on - strand, within GFF5165 at 19.565 kb on + strand at 19.565 kb on + strand at 19.566 kb on - strand at 19.605 kb on + strand at 19.605 kb on + strand at 19.605 kb on + strand at 19.605 kb on + strand at 19.605 kb on + strand at 19.606 kb on - strand at 19.610 kb on + strand at 19.611 kb on - strand at 19.611 kb on - strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.240 kb on + strand, within GFF5167 at 20.240 kb on + strand, within GFF5167 at 20.241 kb on - strand, within GFF5167 at 20.241 kb on - strand, within GFF5167 at 20.267 kb on + strand, within GFF5167 at 20.267 kb on + strand, within GFF5167 at 20.267 kb on + strand, within GFF5167 at 20.267 kb on + strand, within GFF5167 at 20.267 kb on + strand, within GFF5167 at 20.268 kb on - strand, within GFF5167 at 20.268 kb on - strand, within GFF5167 at 20.268 kb on - strand, within GFF5167 at 20.268 kb on - strand, within GFF5167 at 20.268 kb on - strand, within GFF5167 at 20.268 kb on - strand, within GFF5167 at 20.480 kb on + strand at 20.480 kb on + strand at 20.481 kb on - strand at 20.492 kb on + strand at 20.492 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 17,603 + GFF5163 0.84 -0.7 17,603 + GFF5163 0.84 -0.1 17,603 + GFF5163 0.84 -0.4 17,603 + GFF5163 0.84 -0.4 17,603 + GFF5163 0.84 -0.9 17,604 - GFF5163 0.84 -0.0 17,604 - GFF5163 0.84 +0.1 17,604 - GFF5163 0.84 -0.4 17,604 - GFF5163 0.84 -0.2 17,615 + GFF5163 0.85 -0.2 17,615 + GFF5163 0.85 -0.2 17,616 - GFF5163 0.85 -0.6 17,616 - GFF5163 0.85 -0.3 17,616 - GFF5163 0.85 +0.7 17,681 + GFF5163 0.88 +0.5 17,681 + GFF5163 0.88 -0.7 17,681 + GFF5163 0.88 +0.6 17,682 - GFF5163 0.88 -0.3 17,934 + +0.1 17,934 + -0.4 17,934 + +0.1 17,935 - -0.4 17,935 - -0.3 17,935 - -0.8 17,935 - +0.7 18,112 + GFF5164 0.29 -0.9 18,112 + GFF5164 0.29 -0.6 18,113 - GFF5164 0.29 +0.6 18,113 - GFF5164 0.29 -0.3 18,113 - GFF5164 0.29 +0.2 18,113 - GFF5164 0.29 -0.5 18,259 + GFF5164 0.52 -1.2 18,290 - GFF5164 0.57 -0.2 18,290 - GFF5164 0.57 -0.3 18,358 + GFF5164 0.68 -0.5 18,358 + GFF5164 0.68 -0.6 18,359 - GFF5164 0.69 -1.9 18,359 - GFF5164 0.69 -0.7 18,359 - GFF5164 0.69 -0.5 18,359 - GFF5164 0.69 -1.8 18,359 - GFF5164 0.69 +0.7 18,400 + GFF5164 0.75 +1.4 18,400 + GFF5164 0.75 +0.7 18,401 - GFF5164 0.75 +1.1 18,401 - GFF5164 0.75 -0.6 18,401 - GFF5164 0.75 +0.3 18,401 - GFF5164 0.75 -1.0 18,401 - GFF5164 0.75 -0.4 18,701 + GFF5165 0.14 -0.3 18,701 + GFF5165 0.14 -0.3 18,702 - GFF5165 0.14 +0.8 18,702 - GFF5165 0.14 -0.2 18,702 - GFF5165 0.14 -1.6 18,833 + GFF5165 0.28 -0.2 18,833 + GFF5165 0.28 +0.5 18,834 - GFF5165 0.28 +0.1 18,839 + GFF5165 0.28 -0.1 18,839 + GFF5165 0.28 +0.1 18,839 + GFF5165 0.28 +0.9 18,839 + GFF5165 0.28 -0.5 18,839 + GFF5165 0.28 +0.1 18,839 + GFF5165 0.28 -0.0 18,839 + GFF5165 0.28 -1.8 18,840 - GFF5165 0.28 -0.1 18,840 - GFF5165 0.28 -0.5 18,840 - GFF5165 0.28 -0.7 18,840 - GFF5165 0.28 +0.1 18,840 - GFF5165 0.28 +0.3 18,840 - GFF5165 0.28 +0.0 18,840 - GFF5165 0.28 +0.1 18,840 - GFF5165 0.28 +0.4 18,840 - GFF5165 0.28 +1.9 18,840 - GFF5165 0.28 +0.2 18,840 - GFF5165 0.28 +0.1 18,840 - GFF5165 0.28 -0.3 18,848 + GFF5165 0.29 +0.5 18,848 + GFF5165 0.29 +0.5 18,848 + GFF5165 0.29 -0.1 18,849 - GFF5165 0.29 -0.5 18,849 - GFF5165 0.29 -0.1 18,849 - GFF5165 0.29 -0.1 18,849 - GFF5165 0.29 +1.1 19,157 - GFF5165 0.60 -0.2 19,264 + GFF5165 0.71 -0.6 19,265 - GFF5165 0.71 +0.2 19,265 - GFF5165 0.71 -0.3 19,265 - GFF5165 0.71 +0.2 19,265 - GFF5165 0.71 -0.0 19,265 - GFF5165 0.71 +0.4 19,265 - GFF5165 0.71 +0.3 19,565 + -0.6 19,565 + -0.3 19,566 - -0.3 19,605 + +0.1 19,605 + +0.1 19,605 + +0.7 19,605 + -1.4 19,605 + -0.4 19,606 - -0.2 19,610 + +0.3 19,611 - -0.1 19,611 - -0.3 20,023 + +1.5 20,023 + -0.5 20,023 + -1.3 20,023 + -0.2 20,023 + +0.6 20,023 + +0.2 20,023 + +0.0 20,023 + -0.3 20,023 + -0.9 20,023 + -0.5 20,023 + -0.3 20,023 + -0.3 20,023 + +0.5 20,023 + -0.3 20,024 - -0.2 20,024 - -0.1 20,024 - +0.1 20,024 - +0.4 20,024 - +1.3 20,024 - -0.6 20,024 - +0.1 20,024 - +0.5 20,024 - -1.2 20,024 - -1.0 20,024 - -0.3 20,024 - -0.1 20,240 + GFF5167 0.32 +0.4 20,240 + GFF5167 0.32 -0.9 20,241 - GFF5167 0.32 +1.7 20,241 - GFF5167 0.32 -0.4 20,267 + GFF5167 0.39 +0.9 20,267 + GFF5167 0.39 -1.3 20,267 + GFF5167 0.39 +0.0 20,267 + GFF5167 0.39 -0.4 20,267 + GFF5167 0.39 +0.1 20,268 - GFF5167 0.39 -0.3 20,268 - GFF5167 0.39 +2.3 20,268 - GFF5167 0.39 +1.7 20,268 - GFF5167 0.39 -0.8 20,268 - GFF5167 0.39 -0.1 20,268 - GFF5167 0.39 -0.6 20,480 + -0.9 20,480 + +0.6 20,481 - +0.7 20,492 + +0.4 20,492 + +0.5
Or see this region's nucleotide sequence