Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5163 and GFF5164 are separated by 9 nucleotides GFF5164 and GFF5165 are separated by 9 nucleotides
GFF5163 - Soluble lytic murein transglycosylase (EC 4.2.2.n1), at 15,895 to 17,925
GFF5163
GFF5164 - 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2), at 17,935 to 18,552
GFF5164
GFF5165 - Transcriptional regulator, LysR family, at 18,562 to 19,545
GFF5165
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 16.994 kb on + strand, within GFF5163 at 16.994 kb on + strand, within GFF5163 at 16.994 kb on + strand, within GFF5163 at 16.995 kb on - strand, within GFF5163 at 16.995 kb on - strand, within GFF5163 at 17.483 kb on + strand, within GFF5163 at 17.483 kb on + strand, within GFF5163 at 17.483 kb on + strand, within GFF5163 at 17.483 kb on + strand, within GFF5163 at 17.484 kb on - strand, within GFF5163 at 17.484 kb on - strand, within GFF5163 at 17.484 kb on - strand, within GFF5163 at 17.484 kb on - strand, within GFF5163 at 17.484 kb on - strand, within GFF5163 at 17.491 kb on + strand, within GFF5163 at 17.491 kb on + strand, within GFF5163 at 17.491 kb on + strand, within GFF5163 at 17.491 kb on + strand, within GFF5163 at 17.491 kb on + strand, within GFF5163 at 17.491 kb on + strand, within GFF5163 at 17.491 kb on + strand, within GFF5163 at 17.491 kb on + strand, within GFF5163 at 17.491 kb on + strand, within GFF5163 at 17.491 kb on + strand, within GFF5163 at 17.491 kb on + strand, within GFF5163 at 17.492 kb on - strand, within GFF5163 at 17.492 kb on - strand, within GFF5163 at 17.492 kb on - strand, within GFF5163 at 17.492 kb on - strand, within GFF5163 at 17.492 kb on - strand, within GFF5163 at 17.603 kb on + strand, within GFF5163 at 17.603 kb on + strand, within GFF5163 at 17.603 kb on + strand, within GFF5163 at 17.603 kb on + strand, within GFF5163 at 17.603 kb on + strand, within GFF5163 at 17.604 kb on - strand, within GFF5163 at 17.604 kb on - strand, within GFF5163 at 17.604 kb on - strand, within GFF5163 at 17.604 kb on - strand, within GFF5163 at 17.615 kb on + strand, within GFF5163 at 17.615 kb on + strand, within GFF5163 at 17.616 kb on - strand, within GFF5163 at 17.616 kb on - strand, within GFF5163 at 17.616 kb on - strand, within GFF5163 at 17.681 kb on + strand, within GFF5163 at 17.681 kb on + strand, within GFF5163 at 17.681 kb on + strand, within GFF5163 at 17.682 kb on - strand, within GFF5163 at 17.934 kb on + strand at 17.934 kb on + strand at 17.934 kb on + strand at 17.935 kb on - strand at 17.935 kb on - strand at 17.935 kb on - strand at 17.935 kb on - strand at 18.112 kb on + strand, within GFF5164 at 18.112 kb on + strand, within GFF5164 at 18.113 kb on - strand, within GFF5164 at 18.113 kb on - strand, within GFF5164 at 18.113 kb on - strand, within GFF5164 at 18.113 kb on - strand, within GFF5164 at 18.259 kb on + strand, within GFF5164 at 18.290 kb on - strand, within GFF5164 at 18.290 kb on - strand, within GFF5164 at 18.358 kb on + strand, within GFF5164 at 18.358 kb on + strand, within GFF5164 at 18.359 kb on - strand, within GFF5164 at 18.359 kb on - strand, within GFF5164 at 18.359 kb on - strand, within GFF5164 at 18.359 kb on - strand, within GFF5164 at 18.359 kb on - strand, within GFF5164 at 18.400 kb on + strand, within GFF5164 at 18.400 kb on + strand, within GFF5164 at 18.401 kb on - strand, within GFF5164 at 18.401 kb on - strand, within GFF5164 at 18.401 kb on - strand, within GFF5164 at 18.401 kb on - strand, within GFF5164 at 18.401 kb on - strand, within GFF5164 at 18.701 kb on + strand, within GFF5165 at 18.701 kb on + strand, within GFF5165 at 18.702 kb on - strand, within GFF5165 at 18.702 kb on - strand, within GFF5165 at 18.702 kb on - strand, within GFF5165 at 18.833 kb on + strand, within GFF5165 at 18.833 kb on + strand, within GFF5165 at 18.834 kb on - strand, within GFF5165 at 18.839 kb on + strand, within GFF5165 at 18.839 kb on + strand, within GFF5165 at 18.839 kb on + strand, within GFF5165 at 18.839 kb on + strand, within GFF5165 at 18.839 kb on + strand, within GFF5165 at 18.839 kb on + strand, within GFF5165 at 18.839 kb on + strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.840 kb on - strand, within GFF5165 at 18.848 kb on + strand, within GFF5165 at 18.848 kb on + strand, within GFF5165 at 18.848 kb on + strand, within GFF5165 at 18.849 kb on - strand, within GFF5165 at 18.849 kb on - strand, within GFF5165 at 18.849 kb on - strand, within GFF5165 at 18.849 kb on - strand, within GFF5165 at 19.157 kb on - strand, within GFF5165 at 19.264 kb on + strand, within GFF5165 at 19.265 kb on - strand, within GFF5165 at 19.265 kb on - strand, within GFF5165 at 19.265 kb on - strand, within GFF5165 at 19.265 kb on - strand, within GFF5165 at 19.265 kb on - strand, within GFF5165 at 19.265 kb on - strand, within GFF5165
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 16,994 + GFF5163 0.54 -0.4 16,994 + GFF5163 0.54 -0.2 16,994 + GFF5163 0.54 +0.4 16,995 - GFF5163 0.54 -2.0 16,995 - GFF5163 0.54 -0.8 17,483 + GFF5163 0.78 -0.8 17,483 + GFF5163 0.78 +0.7 17,483 + GFF5163 0.78 +0.2 17,483 + GFF5163 0.78 -0.3 17,484 - GFF5163 0.78 -0.4 17,484 - GFF5163 0.78 -0.0 17,484 - GFF5163 0.78 +1.1 17,484 - GFF5163 0.78 -1.5 17,484 - GFF5163 0.78 -0.4 17,491 + GFF5163 0.79 -0.6 17,491 + GFF5163 0.79 +0.4 17,491 + GFF5163 0.79 +0.4 17,491 + GFF5163 0.79 -0.3 17,491 + GFF5163 0.79 -0.7 17,491 + GFF5163 0.79 -0.8 17,491 + GFF5163 0.79 +0.2 17,491 + GFF5163 0.79 -0.2 17,491 + GFF5163 0.79 -0.4 17,491 + GFF5163 0.79 +0.3 17,491 + GFF5163 0.79 +0.5 17,492 - GFF5163 0.79 -0.1 17,492 - GFF5163 0.79 -0.5 17,492 - GFF5163 0.79 -0.5 17,492 - GFF5163 0.79 +0.1 17,492 - GFF5163 0.79 +0.5 17,603 + GFF5163 0.84 -0.7 17,603 + GFF5163 0.84 -0.1 17,603 + GFF5163 0.84 -0.4 17,603 + GFF5163 0.84 -0.4 17,603 + GFF5163 0.84 -0.9 17,604 - GFF5163 0.84 -0.0 17,604 - GFF5163 0.84 +0.1 17,604 - GFF5163 0.84 -0.4 17,604 - GFF5163 0.84 -0.2 17,615 + GFF5163 0.85 -0.2 17,615 + GFF5163 0.85 -0.2 17,616 - GFF5163 0.85 -0.6 17,616 - GFF5163 0.85 -0.3 17,616 - GFF5163 0.85 +0.7 17,681 + GFF5163 0.88 +0.5 17,681 + GFF5163 0.88 -0.7 17,681 + GFF5163 0.88 +0.6 17,682 - GFF5163 0.88 -0.3 17,934 + +0.1 17,934 + -0.4 17,934 + +0.1 17,935 - -0.4 17,935 - -0.3 17,935 - -0.8 17,935 - +0.7 18,112 + GFF5164 0.29 -0.9 18,112 + GFF5164 0.29 -0.6 18,113 - GFF5164 0.29 +0.6 18,113 - GFF5164 0.29 -0.3 18,113 - GFF5164 0.29 +0.2 18,113 - GFF5164 0.29 -0.5 18,259 + GFF5164 0.52 -1.2 18,290 - GFF5164 0.57 -0.2 18,290 - GFF5164 0.57 -0.3 18,358 + GFF5164 0.68 -0.5 18,358 + GFF5164 0.68 -0.6 18,359 - GFF5164 0.69 -1.9 18,359 - GFF5164 0.69 -0.7 18,359 - GFF5164 0.69 -0.5 18,359 - GFF5164 0.69 -1.8 18,359 - GFF5164 0.69 +0.7 18,400 + GFF5164 0.75 +1.4 18,400 + GFF5164 0.75 +0.7 18,401 - GFF5164 0.75 +1.1 18,401 - GFF5164 0.75 -0.6 18,401 - GFF5164 0.75 +0.3 18,401 - GFF5164 0.75 -1.0 18,401 - GFF5164 0.75 -0.4 18,701 + GFF5165 0.14 -0.3 18,701 + GFF5165 0.14 -0.3 18,702 - GFF5165 0.14 +0.8 18,702 - GFF5165 0.14 -0.2 18,702 - GFF5165 0.14 -1.6 18,833 + GFF5165 0.28 -0.2 18,833 + GFF5165 0.28 +0.5 18,834 - GFF5165 0.28 +0.1 18,839 + GFF5165 0.28 -0.1 18,839 + GFF5165 0.28 +0.1 18,839 + GFF5165 0.28 +0.9 18,839 + GFF5165 0.28 -0.5 18,839 + GFF5165 0.28 +0.1 18,839 + GFF5165 0.28 -0.0 18,839 + GFF5165 0.28 -1.8 18,840 - GFF5165 0.28 -0.1 18,840 - GFF5165 0.28 -0.5 18,840 - GFF5165 0.28 -0.7 18,840 - GFF5165 0.28 +0.1 18,840 - GFF5165 0.28 +0.3 18,840 - GFF5165 0.28 +0.0 18,840 - GFF5165 0.28 +0.1 18,840 - GFF5165 0.28 +0.4 18,840 - GFF5165 0.28 +1.9 18,840 - GFF5165 0.28 +0.2 18,840 - GFF5165 0.28 +0.1 18,840 - GFF5165 0.28 -0.3 18,848 + GFF5165 0.29 +0.5 18,848 + GFF5165 0.29 +0.5 18,848 + GFF5165 0.29 -0.1 18,849 - GFF5165 0.29 -0.5 18,849 - GFF5165 0.29 -0.1 18,849 - GFF5165 0.29 -0.1 18,849 - GFF5165 0.29 +1.1 19,157 - GFF5165 0.60 -0.2 19,264 + GFF5165 0.71 -0.6 19,265 - GFF5165 0.71 +0.2 19,265 - GFF5165 0.71 -0.3 19,265 - GFF5165 0.71 +0.2 19,265 - GFF5165 0.71 -0.0 19,265 - GFF5165 0.71 +0.4 19,265 - GFF5165 0.71 +0.3
Or see this region's nucleotide sequence