Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF508 and GFF509 are separated by 16 nucleotides GFF509 and GFF510 overlap by 4 nucleotides GFF510 and GFF511 overlap by 4 nucleotides GFF511 and GFF512 overlap by 4 nucleotides
GFF508 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 549,582 to 550,649
GFF508
GFF509 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 550,666 to 551,646
GFF509
GFF510 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 551,643 to 552,371
GFF510
GFF511 - no description, at 552,368 to 552,514
GFF511
GFF512 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 552,511 to 553,278
GFF512
Position (kb) 550
551
552 Strain fitness (log2 ratio) -2
-1
0
1 at 549.754 kb on + strand, within GFF508 at 549.754 kb on + strand, within GFF508 at 549.755 kb on - strand, within GFF508 at 549.799 kb on + strand, within GFF508 at 549.799 kb on + strand, within GFF508 at 549.800 kb on - strand, within GFF508 at 549.883 kb on + strand, within GFF508 at 549.884 kb on - strand, within GFF508 at 549.958 kb on + strand, within GFF508 at 549.958 kb on + strand, within GFF508 at 549.959 kb on - strand, within GFF508 at 549.959 kb on - strand, within GFF508 at 550.093 kb on + strand, within GFF508 at 550.093 kb on + strand, within GFF508 at 550.093 kb on + strand, within GFF508 at 550.093 kb on + strand, within GFF508 at 550.093 kb on + strand, within GFF508 at 550.093 kb on + strand, within GFF508 at 550.094 kb on - strand, within GFF508 at 550.094 kb on - strand, within GFF508 at 550.094 kb on - strand, within GFF508 at 550.096 kb on + strand, within GFF508 at 550.096 kb on + strand, within GFF508 at 550.096 kb on + strand, within GFF508 at 550.096 kb on + strand, within GFF508 at 550.096 kb on + strand, within GFF508 at 550.097 kb on - strand, within GFF508 at 550.097 kb on - strand, within GFF508 at 550.411 kb on + strand, within GFF508 at 550.412 kb on - strand, within GFF508 at 550.463 kb on - strand, within GFF508 at 550.685 kb on + strand at 550.686 kb on - strand at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 551.647 kb on - strand at 551.647 kb on - strand at 551.647 kb on - strand at 552.118 kb on + strand, within GFF510 at 552.118 kb on + strand, within GFF510 at 552.118 kb on + strand, within GFF510 at 552.118 kb on + strand, within GFF510 at 552.119 kb on - strand, within GFF510 at 552.119 kb on - strand, within GFF510 at 552.119 kb on - strand, within GFF510 at 552.119 kb on - strand, within GFF510 at 552.316 kb on + strand at 552.317 kb on - strand at 552.375 kb on + strand at 552.375 kb on + strand at 552.376 kb on - strand at 552.542 kb on + strand at 552.542 kb on + strand at 552.542 kb on + strand at 552.543 kb on - strand at 552.543 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 549,754 + GFF508 0.16 -0.9 549,754 + GFF508 0.16 -0.2 549,755 - GFF508 0.16 -0.1 549,799 + GFF508 0.20 -1.1 549,799 + GFF508 0.20 -0.5 549,800 - GFF508 0.20 -0.6 549,883 + GFF508 0.28 -1.3 549,884 - GFF508 0.28 -1.5 549,958 + GFF508 0.35 -0.8 549,958 + GFF508 0.35 -0.5 549,959 - GFF508 0.35 -0.3 549,959 - GFF508 0.35 +0.0 550,093 + GFF508 0.48 -0.2 550,093 + GFF508 0.48 +0.3 550,093 + GFF508 0.48 -0.3 550,093 + GFF508 0.48 +0.6 550,093 + GFF508 0.48 -0.8 550,093 + GFF508 0.48 -0.3 550,094 - GFF508 0.48 +0.8 550,094 - GFF508 0.48 -0.8 550,094 - GFF508 0.48 -0.5 550,096 + GFF508 0.48 -1.9 550,096 + GFF508 0.48 -1.1 550,096 + GFF508 0.48 -0.6 550,096 + GFF508 0.48 -0.2 550,096 + GFF508 0.48 -0.3 550,097 - GFF508 0.48 +0.8 550,097 - GFF508 0.48 +0.0 550,411 + GFF508 0.78 -0.3 550,412 - GFF508 0.78 +1.5 550,463 - GFF508 0.82 +0.1 550,685 + +0.3 550,686 - +0.8 550,772 + GFF509 0.11 +0.5 550,772 + GFF509 0.11 +0.6 550,772 + GFF509 0.11 +0.6 550,772 + GFF509 0.11 -0.7 550,772 + GFF509 0.11 -0.0 550,772 + GFF509 0.11 -0.1 550,773 - GFF509 0.11 -1.7 550,773 - GFF509 0.11 +0.3 550,773 - GFF509 0.11 +1.0 550,773 - GFF509 0.11 +1.3 550,773 - GFF509 0.11 -0.2 550,773 - GFF509 0.11 +0.1 550,773 - GFF509 0.11 +0.2 550,773 - GFF509 0.11 -0.3 551,647 - -2.5 551,647 - -0.6 551,647 - -0.0 552,118 + GFF510 0.65 -0.8 552,118 + GFF510 0.65 -0.8 552,118 + GFF510 0.65 -1.0 552,118 + GFF510 0.65 -0.5 552,119 - GFF510 0.65 -0.2 552,119 - GFF510 0.65 +0.1 552,119 - GFF510 0.65 +0.9 552,119 - GFF510 0.65 +0.6 552,316 + -0.3 552,317 - +0.2 552,375 + -0.7 552,375 + -0.3 552,376 - -0.5 552,542 + -0.1 552,542 + -0.5 552,542 + -0.5 552,543 - -0.1 552,543 - -0.7
Or see this region's nucleotide sequence