Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF506 and GFF507 are separated by 62 nucleotides GFF507 and GFF508 overlap by 4 nucleotides GFF508 and GFF509 are separated by 16 nucleotides GFF509 and GFF510 overlap by 4 nucleotides
GFF506 - hypothetical protein, at 548,123 to 548,629
GFF506
GFF507 - Hydrolase, alpha/beta fold family, at 548,692 to 549,585
GFF507
GFF508 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 549,582 to 550,649
GFF508
GFF509 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 550,666 to 551,646
GFF509
GFF510 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 551,643 to 552,371
GFF510
Position (kb) 549
550
551 Strain fitness (log2 ratio) -2
-1
0
1 at 548.613 kb on + strand at 548.613 kb on + strand at 548.613 kb on + strand at 548.613 kb on + strand at 548.613 kb on + strand at 548.613 kb on + strand at 548.614 kb on - strand at 548.921 kb on + strand, within GFF507 at 548.921 kb on + strand, within GFF507 at 548.921 kb on + strand, within GFF507 at 548.921 kb on + strand, within GFF507 at 548.921 kb on + strand, within GFF507 at 548.922 kb on - strand, within GFF507 at 548.967 kb on - strand, within GFF507 at 549.059 kb on + strand, within GFF507 at 549.122 kb on + strand, within GFF507 at 549.261 kb on + strand, within GFF507 at 549.261 kb on + strand, within GFF507 at 549.261 kb on + strand, within GFF507 at 549.261 kb on + strand, within GFF507 at 549.261 kb on + strand, within GFF507 at 549.323 kb on + strand, within GFF507 at 549.324 kb on - strand, within GFF507 at 549.338 kb on + strand, within GFF507 at 549.338 kb on + strand, within GFF507 at 549.338 kb on + strand, within GFF507 at 549.338 kb on + strand, within GFF507 at 549.338 kb on + strand, within GFF507 at 549.338 kb on + strand, within GFF507 at 549.338 kb on + strand, within GFF507 at 549.338 kb on + strand, within GFF507 at 549.339 kb on - strand, within GFF507 at 549.339 kb on - strand, within GFF507 at 549.339 kb on - strand, within GFF507 at 549.339 kb on - strand, within GFF507 at 549.339 kb on - strand, within GFF507 at 549.339 kb on - strand, within GFF507 at 549.545 kb on + strand at 549.546 kb on - strand at 549.631 kb on + strand at 549.631 kb on + strand at 549.631 kb on + strand at 549.631 kb on + strand at 549.632 kb on - strand at 549.632 kb on - strand at 549.632 kb on - strand at 549.632 kb on - strand at 549.632 kb on - strand at 549.634 kb on + strand at 549.754 kb on + strand, within GFF508 at 549.754 kb on + strand, within GFF508 at 549.755 kb on - strand, within GFF508 at 549.799 kb on + strand, within GFF508 at 549.799 kb on + strand, within GFF508 at 549.800 kb on - strand, within GFF508 at 549.883 kb on + strand, within GFF508 at 549.884 kb on - strand, within GFF508 at 549.958 kb on + strand, within GFF508 at 549.958 kb on + strand, within GFF508 at 549.959 kb on - strand, within GFF508 at 549.959 kb on - strand, within GFF508 at 550.093 kb on + strand, within GFF508 at 550.093 kb on + strand, within GFF508 at 550.093 kb on + strand, within GFF508 at 550.093 kb on + strand, within GFF508 at 550.093 kb on + strand, within GFF508 at 550.093 kb on + strand, within GFF508 at 550.094 kb on - strand, within GFF508 at 550.094 kb on - strand, within GFF508 at 550.094 kb on - strand, within GFF508 at 550.096 kb on + strand, within GFF508 at 550.096 kb on + strand, within GFF508 at 550.096 kb on + strand, within GFF508 at 550.096 kb on + strand, within GFF508 at 550.096 kb on + strand, within GFF508 at 550.097 kb on - strand, within GFF508 at 550.097 kb on - strand, within GFF508 at 550.411 kb on + strand, within GFF508 at 550.412 kb on - strand, within GFF508 at 550.463 kb on - strand, within GFF508 at 550.685 kb on + strand at 550.686 kb on - strand at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 551.647 kb on - strand at 551.647 kb on - strand at 551.647 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 548,613 + -1.0 548,613 + -0.1 548,613 + -0.0 548,613 + -0.6 548,613 + -0.0 548,613 + +0.7 548,614 - +0.5 548,921 + GFF507 0.26 -1.0 548,921 + GFF507 0.26 -0.5 548,921 + GFF507 0.26 -0.4 548,921 + GFF507 0.26 -0.5 548,921 + GFF507 0.26 -0.2 548,922 - GFF507 0.26 +0.3 548,967 - GFF507 0.31 -0.0 549,059 + GFF507 0.41 -0.6 549,122 + GFF507 0.48 -0.0 549,261 + GFF507 0.64 -0.3 549,261 + GFF507 0.64 -0.6 549,261 + GFF507 0.64 +0.2 549,261 + GFF507 0.64 -0.7 549,261 + GFF507 0.64 -0.3 549,323 + GFF507 0.71 -1.3 549,324 - GFF507 0.71 -1.6 549,338 + GFF507 0.72 -0.8 549,338 + GFF507 0.72 +0.7 549,338 + GFF507 0.72 -0.4 549,338 + GFF507 0.72 -0.6 549,338 + GFF507 0.72 -0.1 549,338 + GFF507 0.72 +0.1 549,338 + GFF507 0.72 -0.1 549,338 + GFF507 0.72 -1.0 549,339 - GFF507 0.72 +0.1 549,339 - GFF507 0.72 +0.1 549,339 - GFF507 0.72 +0.2 549,339 - GFF507 0.72 -0.3 549,339 - GFF507 0.72 +0.5 549,339 - GFF507 0.72 -0.6 549,545 + -0.6 549,546 - -0.6 549,631 + +0.1 549,631 + -0.3 549,631 + +0.6 549,631 + -0.1 549,632 - +0.2 549,632 - -1.2 549,632 - -1.4 549,632 - -0.0 549,632 - -0.5 549,634 + +0.1 549,754 + GFF508 0.16 -0.9 549,754 + GFF508 0.16 -0.2 549,755 - GFF508 0.16 -0.1 549,799 + GFF508 0.20 -1.1 549,799 + GFF508 0.20 -0.5 549,800 - GFF508 0.20 -0.6 549,883 + GFF508 0.28 -1.3 549,884 - GFF508 0.28 -1.5 549,958 + GFF508 0.35 -0.8 549,958 + GFF508 0.35 -0.5 549,959 - GFF508 0.35 -0.3 549,959 - GFF508 0.35 +0.0 550,093 + GFF508 0.48 -0.2 550,093 + GFF508 0.48 +0.3 550,093 + GFF508 0.48 -0.3 550,093 + GFF508 0.48 +0.6 550,093 + GFF508 0.48 -0.8 550,093 + GFF508 0.48 -0.3 550,094 - GFF508 0.48 +0.8 550,094 - GFF508 0.48 -0.8 550,094 - GFF508 0.48 -0.5 550,096 + GFF508 0.48 -1.9 550,096 + GFF508 0.48 -1.1 550,096 + GFF508 0.48 -0.6 550,096 + GFF508 0.48 -0.2 550,096 + GFF508 0.48 -0.3 550,097 - GFF508 0.48 +0.8 550,097 - GFF508 0.48 +0.0 550,411 + GFF508 0.78 -0.3 550,412 - GFF508 0.78 +1.5 550,463 - GFF508 0.82 +0.1 550,685 + +0.3 550,686 - +0.8 550,772 + GFF509 0.11 +0.5 550,772 + GFF509 0.11 +0.6 550,772 + GFF509 0.11 +0.6 550,772 + GFF509 0.11 -0.7 550,772 + GFF509 0.11 -0.0 550,772 + GFF509 0.11 -0.1 550,773 - GFF509 0.11 -1.7 550,773 - GFF509 0.11 +0.3 550,773 - GFF509 0.11 +1.0 550,773 - GFF509 0.11 +1.3 550,773 - GFF509 0.11 -0.2 550,773 - GFF509 0.11 +0.1 550,773 - GFF509 0.11 +0.2 550,773 - GFF509 0.11 -0.3 551,647 - -2.5 551,647 - -0.6 551,647 - -0.0
Or see this region's nucleotide sequence