Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5043 and GFF5044 are separated by 4 nucleotides GFF5044 and GFF5045 are separated by 16 nucleotides GFF5045 and GFF5046 are separated by 18 nucleotides
GFF5043 - ABC transporter, permease protein (cluster 9, phospholipid), at 144,932 to 146,098
GFF5043
GFF5044 - ABC transporter, ATP-binding protein (cluster 9, phospholipid), at 146,103 to 146,948
GFF5044
GFF5045 - ABC transporter, substrate-binding protein (cluster 9, phospholipid), at 146,965 to 147,924
GFF5045
GFF5046 - putative lipoprotein, at 147,943 to 148,656
GFF5046
Position (kb) 146
147 Strain fitness (log2 ratio) -2
-1
0
1
2 at 145.259 kb on + strand, within GFF5043 at 145.259 kb on + strand, within GFF5043 at 145.259 kb on + strand, within GFF5043 at 145.259 kb on + strand, within GFF5043 at 145.259 kb on + strand, within GFF5043 at 145.259 kb on + strand, within GFF5043 at 145.259 kb on + strand, within GFF5043 at 145.259 kb on + strand, within GFF5043 at 145.259 kb on + strand, within GFF5043 at 145.260 kb on - strand, within GFF5043 at 145.260 kb on - strand, within GFF5043 at 145.260 kb on - strand, within GFF5043 at 145.260 kb on - strand, within GFF5043 at 145.260 kb on - strand, within GFF5043 at 145.260 kb on - strand, within GFF5043 at 145.451 kb on + strand, within GFF5043 at 145.452 kb on - strand, within GFF5043 at 145.452 kb on - strand, within GFF5043 at 145.452 kb on - strand, within GFF5043 at 145.497 kb on + strand, within GFF5043 at 145.498 kb on - strand, within GFF5043 at 145.498 kb on - strand, within GFF5043 at 145.520 kb on + strand, within GFF5043 at 145.521 kb on - strand, within GFF5043 at 145.521 kb on - strand, within GFF5043 at 145.521 kb on - strand, within GFF5043 at 145.521 kb on - strand, within GFF5043 at 145.716 kb on + strand, within GFF5043 at 145.716 kb on + strand, within GFF5043 at 145.843 kb on + strand, within GFF5043 at 145.843 kb on + strand, within GFF5043 at 145.843 kb on + strand, within GFF5043 at 145.843 kb on + strand, within GFF5043 at 145.843 kb on + strand, within GFF5043 at 145.843 kb on + strand, within GFF5043 at 145.844 kb on - strand, within GFF5043 at 145.844 kb on - strand, within GFF5043 at 145.856 kb on + strand, within GFF5043 at 145.888 kb on + strand, within GFF5043 at 145.888 kb on + strand, within GFF5043 at 145.888 kb on + strand, within GFF5043 at 145.888 kb on + strand, within GFF5043 at 145.889 kb on - strand, within GFF5043 at 145.889 kb on - strand, within GFF5043 at 145.889 kb on - strand, within GFF5043 at 145.958 kb on + strand, within GFF5043 at 145.958 kb on + strand, within GFF5043 at 145.958 kb on + strand, within GFF5043 at 145.958 kb on + strand, within GFF5043 at 145.959 kb on - strand, within GFF5043 at 145.959 kb on - strand, within GFF5043 at 145.959 kb on - strand, within GFF5043 at 145.959 kb on - strand, within GFF5043 at 145.959 kb on - strand, within GFF5043 at 145.959 kb on - strand, within GFF5043 at 146.029 kb on + strand at 146.029 kb on + strand at 146.030 kb on - strand at 146.030 kb on - strand at 146.030 kb on - strand at 146.030 kb on - strand at 146.847 kb on + strand, within GFF5044 at 146.847 kb on + strand, within GFF5044 at 146.847 kb on + strand, within GFF5044 at 146.847 kb on + strand, within GFF5044 at 146.848 kb on - strand, within GFF5044 at 146.848 kb on - strand, within GFF5044 at 146.953 kb on + strand at 146.953 kb on + strand at 146.953 kb on + strand at 146.953 kb on + strand at 146.953 kb on + strand at 146.953 kb on + strand at 146.954 kb on - strand at 146.954 kb on - strand at 146.957 kb on + strand at 146.957 kb on + strand at 146.957 kb on + strand at 146.957 kb on + strand at 146.957 kb on + strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.969 kb on - strand at 147.076 kb on + strand, within GFF5045 at 147.262 kb on + strand, within GFF5045 at 147.262 kb on + strand, within GFF5045 at 147.262 kb on + strand, within GFF5045 at 147.262 kb on + strand, within GFF5045 at 147.263 kb on - strand, within GFF5045 at 147.263 kb on - strand, within GFF5045 at 147.263 kb on - strand, within GFF5045 at 147.263 kb on - strand, within GFF5045 at 147.737 kb on - strand, within GFF5045
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 145,259 + GFF5043 0.28 +0.0 145,259 + GFF5043 0.28 +0.3 145,259 + GFF5043 0.28 -0.5 145,259 + GFF5043 0.28 -0.3 145,259 + GFF5043 0.28 -0.5 145,259 + GFF5043 0.28 +0.0 145,259 + GFF5043 0.28 +0.2 145,259 + GFF5043 0.28 -0.0 145,259 + GFF5043 0.28 +0.1 145,260 - GFF5043 0.28 -0.4 145,260 - GFF5043 0.28 -0.4 145,260 - GFF5043 0.28 -0.2 145,260 - GFF5043 0.28 -0.5 145,260 - GFF5043 0.28 +0.2 145,260 - GFF5043 0.28 +0.8 145,451 + GFF5043 0.44 -0.8 145,452 - GFF5043 0.45 -0.8 145,452 - GFF5043 0.45 -1.2 145,452 - GFF5043 0.45 +1.3 145,497 + GFF5043 0.48 +0.1 145,498 - GFF5043 0.49 -0.4 145,498 - GFF5043 0.49 -0.8 145,520 + GFF5043 0.50 -0.2 145,521 - GFF5043 0.50 -0.4 145,521 - GFF5043 0.50 +0.5 145,521 - GFF5043 0.50 +0.0 145,521 - GFF5043 0.50 -0.5 145,716 + GFF5043 0.67 -0.5 145,716 + GFF5043 0.67 +1.6 145,843 + GFF5043 0.78 +0.3 145,843 + GFF5043 0.78 +0.3 145,843 + GFF5043 0.78 -0.9 145,843 + GFF5043 0.78 -1.8 145,843 + GFF5043 0.78 -0.7 145,843 + GFF5043 0.78 -0.6 145,844 - GFF5043 0.78 +0.2 145,844 - GFF5043 0.78 -0.5 145,856 + GFF5043 0.79 -0.3 145,888 + GFF5043 0.82 -1.9 145,888 + GFF5043 0.82 -0.1 145,888 + GFF5043 0.82 +0.2 145,888 + GFF5043 0.82 -0.3 145,889 - GFF5043 0.82 -0.2 145,889 - GFF5043 0.82 +2.2 145,889 - GFF5043 0.82 +0.3 145,958 + GFF5043 0.88 -0.5 145,958 + GFF5043 0.88 -0.9 145,958 + GFF5043 0.88 -1.1 145,958 + GFF5043 0.88 -0.4 145,959 - GFF5043 0.88 -0.3 145,959 - GFF5043 0.88 -0.6 145,959 - GFF5043 0.88 -0.4 145,959 - GFF5043 0.88 -0.4 145,959 - GFF5043 0.88 +0.5 145,959 - GFF5043 0.88 +0.1 146,029 + -0.5 146,029 + -0.1 146,030 - -0.4 146,030 - -0.3 146,030 - -0.2 146,030 - -0.3 146,847 + GFF5044 0.88 -1.0 146,847 + GFF5044 0.88 -0.2 146,847 + GFF5044 0.88 -1.1 146,847 + GFF5044 0.88 -0.5 146,848 - GFF5044 0.88 -1.1 146,848 - GFF5044 0.88 -2.6 146,953 + -0.5 146,953 + -0.7 146,953 + +1.0 146,953 + -0.1 146,953 + -0.4 146,953 + +0.7 146,954 - -0.0 146,954 - -0.6 146,957 + +1.0 146,957 + -0.2 146,957 + +2.6 146,957 + +0.4 146,957 + +1.5 146,958 - -0.2 146,958 - +1.8 146,958 - +0.5 146,958 - -0.4 146,958 - +0.1 146,958 - +0.2 146,958 - -0.6 146,958 - +0.5 146,958 - -0.9 146,969 - -1.0 147,076 + GFF5045 0.12 -0.5 147,262 + GFF5045 0.31 +0.1 147,262 + GFF5045 0.31 -0.1 147,262 + GFF5045 0.31 -0.7 147,262 + GFF5045 0.31 -1.0 147,263 - GFF5045 0.31 +0.4 147,263 - GFF5045 0.31 +1.3 147,263 - GFF5045 0.31 -0.5 147,263 - GFF5045 0.31 +2.0 147,737 - GFF5045 0.80 -1.2
Or see this region's nucleotide sequence