Strain Fitness in Variovorax sp. SCN45 around GFF5037

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5036 and GFF5037 are separated by 21 nucleotidesGFF5037 and GFF5038 are separated by 4 nucleotides GFF5036 - Opine oxidase subunit B, at 136,299 to 137,462 GFF5036 GFF5037 - ABC transporter spermidine/putrescine-binding protein, at 137,484 to 138,536 GFF5037 GFF5038 - Tetracycline resistance, MFS efflux pump => Tet(C), at 138,541 to 139,773 GFF5038 Position (kb) 137 138 139Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 136.557 kb on + strand, within GFF5036at 136.557 kb on + strand, within GFF5036at 136.557 kb on + strand, within GFF5036at 136.558 kb on - strand, within GFF5036at 136.621 kb on - strand, within GFF5036at 137.058 kb on + strand, within GFF5036at 137.058 kb on + strand, within GFF5036at 137.058 kb on + strand, within GFF5036at 137.059 kb on - strand, within GFF5036at 137.059 kb on - strand, within GFF5036at 137.059 kb on - strand, within GFF5036at 137.238 kb on + strand, within GFF5036at 137.238 kb on + strand, within GFF5036at 137.239 kb on - strand, within GFF5036at 137.239 kb on - strand, within GFF5036at 137.239 kb on - strand, within GFF5036at 137.239 kb on - strand, within GFF5036at 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.578 kb on - strandat 137.578 kb on - strandat 137.578 kb on - strandat 137.578 kb on - strandat 137.578 kb on - strandat 137.613 kb on + strand, within GFF5037at 137.613 kb on + strand, within GFF5037at 137.613 kb on + strand, within GFF5037at 137.613 kb on + strand, within GFF5037at 137.614 kb on - strand, within GFF5037at 137.614 kb on - strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.649 kb on + strand, within GFF5037at 137.650 kb on - strand, within GFF5037at 137.826 kb on + strand, within GFF5037at 137.826 kb on + strand, within GFF5037at 137.827 kb on - strand, within GFF5037at 137.827 kb on - strand, within GFF5037at 137.892 kb on + strand, within GFF5037at 137.892 kb on + strand, within GFF5037at 137.892 kb on + strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.965 kb on - strand, within GFF5037at 137.965 kb on - strand, within GFF5037at 137.965 kb on - strand, within GFF5037at 137.965 kb on - strand, within GFF5037at 138.117 kb on + strand, within GFF5037at 138.117 kb on + strand, within GFF5037at 138.117 kb on + strand, within GFF5037at 138.117 kb on + strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.231 kb on + strand, within GFF5037at 138.231 kb on + strand, within GFF5037at 138.232 kb on - strand, within GFF5037at 138.366 kb on + strand, within GFF5037at 138.367 kb on - strand, within GFF5037at 138.526 kb on + strandat 138.526 kb on + strandat 138.526 kb on + strandat 138.526 kb on + strandat 138.526 kb on + strandat 138.526 kb on + strandat 138.527 kb on - strandat 138.527 kb on - strandat 138.599 kb on + strandat 138.599 kb on + strandat 138.600 kb on - strandat 138.600 kb on - strandat 138.656 kb on + strandat 138.656 kb on + strandat 138.656 kb on + strandat 138.657 kb on - strandat 138.860 kb on + strand, within GFF5038at 139.025 kb on + strand, within GFF5038at 139.025 kb on + strand, within GFF5038at 139.025 kb on + strand, within GFF5038at 139.025 kb on + strand, within GFF5038at 139.026 kb on - strand, within GFF5038at 139.268 kb on + strand, within GFF5038at 139.268 kb on + strand, within GFF5038

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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136,557 + GFF5036 0.22 -2.1
136,557 + GFF5036 0.22 -2.4
136,557 + GFF5036 0.22 +1.0
136,558 - GFF5036 0.22 -1.0
136,621 - GFF5036 0.28 -0.3
137,058 + GFF5036 0.65 +0.5
137,058 + GFF5036 0.65 -1.5
137,058 + GFF5036 0.65 +1.3
137,059 - GFF5036 0.65 -1.8
137,059 - GFF5036 0.65 -2.4
137,059 - GFF5036 0.65 -0.2
137,238 + GFF5036 0.81 -0.2
137,238 + GFF5036 0.81 -0.8
137,239 - GFF5036 0.81 -2.0
137,239 - GFF5036 0.81 -1.0
137,239 - GFF5036 0.81 -1.7
137,239 - GFF5036 0.81 -0.5
137,577 + +0.3
137,577 + -0.8
137,577 + -0.2
137,577 + -0.8
137,577 + +1.0
137,577 + +0.7
137,577 + +0.4
137,577 + -0.3
137,577 + -0.3
137,577 + +0.1
137,577 + -1.6
137,577 + +1.0
137,577 + -2.8
137,577 + -0.9
137,578 - -1.0
137,578 - +0.8
137,578 - +0.8
137,578 - +0.0
137,578 - +0.3
137,613 + GFF5037 0.12 -0.3
137,613 + GFF5037 0.12 +0.9
137,613 + GFF5037 0.12 -0.4
137,613 + GFF5037 0.12 +1.1
137,614 - GFF5037 0.12 +0.0
137,614 - GFF5037 0.12 +1.4
137,622 + GFF5037 0.13 -1.2
137,622 + GFF5037 0.13 +0.5
137,622 + GFF5037 0.13 +0.1
137,622 + GFF5037 0.13 -0.1
137,622 + GFF5037 0.13 -0.2
137,622 + GFF5037 0.13 -1.4
137,622 + GFF5037 0.13 -0.5
137,622 + GFF5037 0.13 -0.3
137,622 + GFF5037 0.13 -0.2
137,623 - GFF5037 0.13 +0.4
137,623 - GFF5037 0.13 +1.1
137,623 - GFF5037 0.13 +1.4
137,623 - GFF5037 0.13 -0.6
137,623 - GFF5037 0.13 -2.1
137,623 - GFF5037 0.13 -0.2
137,623 - GFF5037 0.13 -1.1
137,623 - GFF5037 0.13 -0.9
137,623 - GFF5037 0.13 +0.0
137,623 - GFF5037 0.13 +0.1
137,649 + GFF5037 0.16 -1.0
137,650 - GFF5037 0.16 -1.0
137,826 + GFF5037 0.32 -1.7
137,826 + GFF5037 0.32 -0.4
137,827 - GFF5037 0.33 -0.7
137,827 - GFF5037 0.33 -0.2
137,892 + GFF5037 0.39 -0.1
137,892 + GFF5037 0.39 -1.0
137,892 + GFF5037 0.39 -0.7
137,893 - GFF5037 0.39 -0.2
137,893 - GFF5037 0.39 -0.2
137,893 - GFF5037 0.39 -0.2
137,893 - GFF5037 0.39 -0.3
137,893 - GFF5037 0.39 -0.5
137,964 + GFF5037 0.46 -0.3
137,964 + GFF5037 0.46 -0.1
137,964 + GFF5037 0.46 -1.4
137,964 + GFF5037 0.46 -1.8
137,964 + GFF5037 0.46 -0.2
137,964 + GFF5037 0.46 -2.2
137,964 + GFF5037 0.46 -0.3
137,964 + GFF5037 0.46 -0.5
137,964 + GFF5037 0.46 -0.0
137,964 + GFF5037 0.46 -0.4
137,964 + GFF5037 0.46 -0.6
137,965 - GFF5037 0.46 -0.4
137,965 - GFF5037 0.46 +0.3
137,965 - GFF5037 0.46 +2.4
137,965 - GFF5037 0.46 -1.6
138,117 + GFF5037 0.60 -0.4
138,117 + GFF5037 0.60 -0.5
138,117 + GFF5037 0.60 +0.2
138,117 + GFF5037 0.60 +0.4
138,118 - GFF5037 0.60 -0.3
138,118 - GFF5037 0.60 +0.4
138,118 - GFF5037 0.60 -0.7
138,118 - GFF5037 0.60 +0.1
138,118 - GFF5037 0.60 -0.2
138,118 - GFF5037 0.60 -0.3
138,118 - GFF5037 0.60 -0.0
138,118 - GFF5037 0.60 -0.3
138,118 - GFF5037 0.60 -0.4
138,118 - GFF5037 0.60 +0.2
138,118 - GFF5037 0.60 +0.1
138,231 + GFF5037 0.71 -1.6
138,231 + GFF5037 0.71 +0.0
138,232 - GFF5037 0.71 -0.4
138,366 + GFF5037 0.84 -0.8
138,367 - GFF5037 0.84 +0.2
138,526 + +1.1
138,526 + +0.4
138,526 + -0.9
138,526 + +0.8
138,526 + -0.1
138,526 + -0.5
138,527 - +0.2
138,527 - -0.3
138,599 + -1.2
138,599 + -0.5
138,600 - -1.0
138,600 - -0.4
138,656 + -0.4
138,656 + -0.6
138,656 + +0.7
138,657 - +0.3
138,860 + GFF5038 0.26 -0.5
139,025 + GFF5038 0.39 +0.3
139,025 + GFF5038 0.39 -0.7
139,025 + GFF5038 0.39 -0.3
139,025 + GFF5038 0.39 -0.5
139,026 - GFF5038 0.39 -1.0
139,268 + GFF5038 0.59 -0.3
139,268 + GFF5038 0.59 -1.4

Or see this region's nucleotide sequence