Strain Fitness in Variovorax sp. SCN45 around GFF5033

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5031 and GFF5032 overlap by 4 nucleotidesGFF5032 and GFF5033 are separated by 4 nucleotidesGFF5033 and GFF5034 are separated by 3 nucleotidesGFF5034 and GFF5035 overlap by 4 nucleotides GFF5031 - ABC-type spermidine/putrescine transport systems, ATPase components, at 131,870 to 132,943 GFF5031 GFF5032 - ABC-type spermidine/putrescine transport system, permease component I, at 132,940 to 133,800 GFF5032 GFF5033 - ABC-type spermidine/putrescine transport system, permease component II, at 133,805 to 134,599 GFF5033 GFF5034 - Opine oxidase subunit C, at 134,603 to 134,908 GFF5034 GFF5035 - Opine oxidase subunit A, at 134,905 to 136,302 GFF5035 Position (kb) 133 134 135Strain fitness (log2 ratio) -2 -1 0 1 2 3at 133.057 kb on + strand, within GFF5032at 133.057 kb on + strand, within GFF5032at 133.057 kb on + strand, within GFF5032at 133.057 kb on + strand, within GFF5032at 133.057 kb on + strand, within GFF5032at 133.057 kb on + strand, within GFF5032at 133.057 kb on + strand, within GFF5032at 133.058 kb on - strand, within GFF5032at 133.058 kb on - strand, within GFF5032at 133.058 kb on - strand, within GFF5032at 133.058 kb on - strand, within GFF5032at 133.105 kb on + strand, within GFF5032at 133.106 kb on - strand, within GFF5032at 133.129 kb on + strand, within GFF5032at 133.129 kb on + strand, within GFF5032at 133.130 kb on - strand, within GFF5032at 133.130 kb on - strand, within GFF5032at 133.130 kb on - strand, within GFF5032at 133.130 kb on - strand, within GFF5032at 133.132 kb on + strand, within GFF5032at 133.132 kb on + strand, within GFF5032at 133.132 kb on + strand, within GFF5032at 133.132 kb on + strand, within GFF5032at 133.132 kb on + strand, within GFF5032at 133.132 kb on + strand, within GFF5032at 133.133 kb on - strand, within GFF5032at 133.133 kb on - strand, within GFF5032at 133.133 kb on - strand, within GFF5032at 133.133 kb on - strand, within GFF5032at 133.133 kb on - strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.387 kb on + strand, within GFF5032at 133.387 kb on + strand, within GFF5032at 133.387 kb on + strand, within GFF5032at 133.387 kb on + strand, within GFF5032at 133.388 kb on - strand, within GFF5032at 133.388 kb on - strand, within GFF5032at 133.388 kb on - strand, within GFF5032at 133.388 kb on - strand, within GFF5032at 133.388 kb on - strand, within GFF5032at 133.388 kb on - strand, within GFF5032at 133.388 kb on - strand, within GFF5032at 133.388 kb on - strand, within GFF5032at 133.662 kb on - strand, within GFF5032at 133.666 kb on + strand, within GFF5032at 133.666 kb on + strand, within GFF5032at 133.666 kb on + strand, within GFF5032at 133.675 kb on + strand, within GFF5032at 133.675 kb on + strand, within GFF5032at 133.675 kb on + strand, within GFF5032at 133.675 kb on + strand, within GFF5032at 133.676 kb on - strand, within GFF5032at 133.676 kb on - strand, within GFF5032at 133.756 kb on + strandat 133.756 kb on + strandat 133.756 kb on + strandat 133.756 kb on + strandat 133.756 kb on + strandat 133.757 kb on - strandat 133.757 kb on - strandat 133.757 kb on - strandat 133.757 kb on - strandat 133.757 kb on - strandat 133.757 kb on - strandat 133.757 kb on - strandat 133.757 kb on - strandat 133.757 kb on - strandat 133.781 kb on - strandat 133.781 kb on - strandat 134.234 kb on + strand, within GFF5033at 134.234 kb on + strand, within GFF5033at 134.234 kb on + strand, within GFF5033at 134.234 kb on + strand, within GFF5033at 134.235 kb on - strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.465 kb on + strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.466 kb on - strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.471 kb on + strand, within GFF5033at 134.472 kb on - strand, within GFF5033at 134.472 kb on - strand, within GFF5033at 134.472 kb on - strand, within GFF5033at 134.472 kb on - strand, within GFF5033at 134.472 kb on - strand, within GFF5033at 134.472 kb on - strand, within GFF5033at 134.472 kb on - strand, within GFF5033at 134.472 kb on - strand, within GFF5033at 134.472 kb on - strand, within GFF5033at 134.564 kb on + strandat 134.564 kb on + strandat 134.564 kb on + strandat 134.565 kb on - strandat 134.565 kb on - strandat 134.565 kb on - strandat 134.565 kb on - strandat 134.597 kb on + strandat 134.597 kb on + strandat 134.597 kb on + strandat 134.598 kb on - strandat 135.034 kb on + strandat 135.034 kb on + strandat 135.034 kb on + strandat 135.034 kb on + strandat 135.034 kb on + strandat 135.035 kb on - strandat 135.035 kb on - strandat 135.082 kb on + strand, within GFF5035at 135.238 kb on + strand, within GFF5035at 135.238 kb on + strand, within GFF5035at 135.238 kb on + strand, within GFF5035at 135.238 kb on + strand, within GFF5035at 135.238 kb on + strand, within GFF5035at 135.313 kb on + strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.404 kb on - strand, within GFF5035at 135.404 kb on - strand, within GFF5035at 135.415 kb on + strand, within GFF5035at 135.415 kb on + strand, within GFF5035at 135.415 kb on + strand, within GFF5035at 135.415 kb on + strand, within GFF5035at 135.416 kb on - strand, within GFF5035at 135.416 kb on - strand, within GFF5035at 135.416 kb on - strand, within GFF5035at 135.421 kb on + strand, within GFF5035at 135.421 kb on + strand, within GFF5035at 135.422 kb on - strand, within GFF5035at 135.422 kb on - strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.538 kb on + strand, within GFF5035at 135.538 kb on + strand, within GFF5035at 135.538 kb on + strand, within GFF5035at 135.538 kb on + strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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133,057 + GFF5032 0.14 -0.6
133,057 + GFF5032 0.14 +1.0
133,057 + GFF5032 0.14 -0.5
133,057 + GFF5032 0.14 -0.3
133,057 + GFF5032 0.14 +1.2
133,057 + GFF5032 0.14 -0.2
133,057 + GFF5032 0.14 +0.4
133,058 - GFF5032 0.14 +0.1
133,058 - GFF5032 0.14 +0.5
133,058 - GFF5032 0.14 -0.1
133,058 - GFF5032 0.14 -0.5
133,105 + GFF5032 0.19 -1.2
133,106 - GFF5032 0.19 +1.2
133,129 + GFF5032 0.22 -0.1
133,129 + GFF5032 0.22 -0.9
133,130 - GFF5032 0.22 -0.1
133,130 - GFF5032 0.22 -0.6
133,130 - GFF5032 0.22 -0.7
133,130 - GFF5032 0.22 -1.2
133,132 + GFF5032 0.22 -0.7
133,132 + GFF5032 0.22 +0.0
133,132 + GFF5032 0.22 -1.4
133,132 + GFF5032 0.22 -0.2
133,132 + GFF5032 0.22 -2.5
133,132 + GFF5032 0.22 +0.6
133,133 - GFF5032 0.22 +1.2
133,133 - GFF5032 0.22 +0.3
133,133 - GFF5032 0.22 -0.2
133,133 - GFF5032 0.22 +0.0
133,133 - GFF5032 0.22 -0.5
133,213 + GFF5032 0.32 +0.2
133,213 + GFF5032 0.32 -0.2
133,213 + GFF5032 0.32 +0.5
133,213 + GFF5032 0.32 -0.8
133,213 + GFF5032 0.32 -1.5
133,213 + GFF5032 0.32 +0.5
133,213 + GFF5032 0.32 +0.4
133,213 + GFF5032 0.32 +0.3
133,213 + GFF5032 0.32 -0.1
133,213 + GFF5032 0.32 +2.1
133,213 + GFF5032 0.32 +0.1
133,213 + GFF5032 0.32 -0.1
133,213 + GFF5032 0.32 -0.3
133,213 + GFF5032 0.32 -0.5
133,214 - GFF5032 0.32 +0.4
133,214 - GFF5032 0.32 +1.2
133,214 - GFF5032 0.32 -1.2
133,214 - GFF5032 0.32 +0.0
133,214 - GFF5032 0.32 -0.7
133,214 - GFF5032 0.32 +0.8
133,214 - GFF5032 0.32 -1.0
133,214 - GFF5032 0.32 -0.5
133,214 - GFF5032 0.32 -0.8
133,214 - GFF5032 0.32 +0.1
133,214 - GFF5032 0.32 -0.2
133,214 - GFF5032 0.32 +0.8
133,214 - GFF5032 0.32 +0.4
133,214 - GFF5032 0.32 -0.6
133,214 - GFF5032 0.32 -0.3
133,214 - GFF5032 0.32 +0.6
133,387 + GFF5032 0.52 +0.8
133,387 + GFF5032 0.52 +0.6
133,387 + GFF5032 0.52 +1.8
133,387 + GFF5032 0.52 -0.2
133,388 - GFF5032 0.52 +0.6
133,388 - GFF5032 0.52 +0.2
133,388 - GFF5032 0.52 -0.0
133,388 - GFF5032 0.52 -0.8
133,388 - GFF5032 0.52 -0.3
133,388 - GFF5032 0.52 -0.5
133,388 - GFF5032 0.52 -0.7
133,388 - GFF5032 0.52 -0.4
133,662 - GFF5032 0.84 -1.7
133,666 + GFF5032 0.84 +0.0
133,666 + GFF5032 0.84 -0.6
133,666 + GFF5032 0.84 +0.1
133,675 + GFF5032 0.85 +0.2
133,675 + GFF5032 0.85 -0.8
133,675 + GFF5032 0.85 -0.8
133,675 + GFF5032 0.85 -0.3
133,676 - GFF5032 0.85 +0.3
133,676 - GFF5032 0.85 -0.3
133,756 + -0.3
133,756 + -0.5
133,756 + -0.4
133,756 + -0.7
133,756 + -0.8
133,757 - +0.1
133,757 - +0.4
133,757 - -0.8
133,757 - +0.5
133,757 - -0.4
133,757 - -0.9
133,757 - -1.3
133,757 - -0.2
133,757 - -0.5
133,781 - -0.6
133,781 - -0.7
134,234 + GFF5033 0.54 -1.0
134,234 + GFF5033 0.54 +0.1
134,234 + GFF5033 0.54 -0.8
134,234 + GFF5033 0.54 -0.0
134,235 - GFF5033 0.54 -0.5
134,465 + GFF5033 0.83 -0.8
134,465 + GFF5033 0.83 -0.3
134,465 + GFF5033 0.83 -0.9
134,465 + GFF5033 0.83 +0.2
134,465 + GFF5033 0.83 +1.6
134,465 + GFF5033 0.83 +1.0
134,465 + GFF5033 0.83 -0.0
134,465 + GFF5033 0.83 -0.4
134,465 + GFF5033 0.83 +1.2
134,465 + GFF5033 0.83 -0.4
134,465 + GFF5033 0.83 +0.5
134,465 + GFF5033 0.83 -1.5
134,465 + GFF5033 0.83 -0.1
134,465 + GFF5033 0.83 -1.2
134,465 + GFF5033 0.83 -0.1
134,465 + GFF5033 0.83 -0.3
134,465 + GFF5033 0.83 -0.4
134,465 + GFF5033 0.83 -0.6
134,465 + GFF5033 0.83 +0.3
134,465 + GFF5033 0.83 +1.4
134,465 + GFF5033 0.83 +0.4
134,465 + GFF5033 0.83 -0.7
134,465 + GFF5033 0.83 -0.9
134,465 + GFF5033 0.83 +0.6
134,465 + GFF5033 0.83 -0.2
134,465 + GFF5033 0.83 +0.4
134,465 + GFF5033 0.83 -0.1
134,465 + GFF5033 0.83 -0.5
134,465 + GFF5033 0.83 +0.2
134,465 + GFF5033 0.83 +0.6
134,465 + GFF5033 0.83 +0.8
134,466 - GFF5033 0.83 -0.2
134,466 - GFF5033 0.83 +0.6
134,466 - GFF5033 0.83 -0.3
134,466 - GFF5033 0.83 -0.2
134,466 - GFF5033 0.83 -1.2
134,466 - GFF5033 0.83 -0.7
134,466 - GFF5033 0.83 +0.5
134,466 - GFF5033 0.83 -0.4
134,466 - GFF5033 0.83 +0.8
134,466 - GFF5033 0.83 -0.6
134,466 - GFF5033 0.83 +0.4
134,466 - GFF5033 0.83 -0.4
134,466 - GFF5033 0.83 +2.2
134,466 - GFF5033 0.83 -0.4
134,466 - GFF5033 0.83 +0.0
134,466 - GFF5033 0.83 +0.0
134,466 - GFF5033 0.83 -0.4
134,466 - GFF5033 0.83 +1.2
134,466 - GFF5033 0.83 -0.3
134,466 - GFF5033 0.83 +0.2
134,466 - GFF5033 0.83 +0.3
134,466 - GFF5033 0.83 -0.5
134,466 - GFF5033 0.83 -0.7
134,466 - GFF5033 0.83 +0.6
134,471 + GFF5033 0.84 +0.2
134,471 + GFF5033 0.84 -0.6
134,471 + GFF5033 0.84 +0.0
134,471 + GFF5033 0.84 +0.8
134,471 + GFF5033 0.84 -0.4
134,471 + GFF5033 0.84 +0.2
134,471 + GFF5033 0.84 -0.4
134,471 + GFF5033 0.84 -0.0
134,471 + GFF5033 0.84 -0.2
134,471 + GFF5033 0.84 +0.0
134,472 - GFF5033 0.84 +2.4
134,472 - GFF5033 0.84 +0.8
134,472 - GFF5033 0.84 -0.4
134,472 - GFF5033 0.84 +0.6
134,472 - GFF5033 0.84 -0.9
134,472 - GFF5033 0.84 -0.7
134,472 - GFF5033 0.84 +0.2
134,472 - GFF5033 0.84 +0.3
134,472 - GFF5033 0.84 -0.0
134,564 + +0.2
134,564 + -0.5
134,564 + +0.5
134,565 - -1.1
134,565 - +0.2
134,565 - +0.1
134,565 - +0.1
134,597 + -0.5
134,597 + -0.3
134,597 + +1.1
134,598 - -1.0
135,034 + +3.1
135,034 + -0.1
135,034 + +0.8
135,034 + -0.1
135,034 + -1.5
135,035 - -0.5
135,035 - +2.8
135,082 + GFF5035 0.13 -1.1
135,238 + GFF5035 0.24 +0.4
135,238 + GFF5035 0.24 +1.2
135,238 + GFF5035 0.24 +0.2
135,238 + GFF5035 0.24 -0.2
135,238 + GFF5035 0.24 -0.0
135,313 + GFF5035 0.29 -1.2
135,314 - GFF5035 0.29 +0.5
135,314 - GFF5035 0.29 +0.2
135,314 - GFF5035 0.29 -0.2
135,314 - GFF5035 0.29 -0.0
135,314 - GFF5035 0.29 -1.4
135,314 - GFF5035 0.29 +0.5
135,403 + GFF5035 0.36 -1.2
135,403 + GFF5035 0.36 -1.1
135,403 + GFF5035 0.36 -0.2
135,403 + GFF5035 0.36 -0.2
135,403 + GFF5035 0.36 -0.8
135,403 + GFF5035 0.36 -0.7
135,404 - GFF5035 0.36 -0.1
135,404 - GFF5035 0.36 -0.5
135,415 + GFF5035 0.36 -1.4
135,415 + GFF5035 0.36 +0.2
135,415 + GFF5035 0.36 -2.6
135,415 + GFF5035 0.36 -0.8
135,416 - GFF5035 0.37 +0.2
135,416 - GFF5035 0.37 -0.6
135,416 - GFF5035 0.37 +0.3
135,421 + GFF5035 0.37 +0.0
135,421 + GFF5035 0.37 -1.9
135,422 - GFF5035 0.37 -0.8
135,422 - GFF5035 0.37 +1.5
135,535 + GFF5035 0.45 -0.8
135,535 + GFF5035 0.45 -1.2
135,535 + GFF5035 0.45 -0.4
135,535 + GFF5035 0.45 +1.8
135,535 + GFF5035 0.45 +1.2
135,535 + GFF5035 0.45 +0.8
135,535 + GFF5035 0.45 -1.0
135,536 - GFF5035 0.45 -0.2
135,536 - GFF5035 0.45 +1.2
135,536 - GFF5035 0.45 +1.8
135,536 - GFF5035 0.45 +0.0
135,536 - GFF5035 0.45 -1.8
135,538 + GFF5035 0.45 +0.4
135,538 + GFF5035 0.45 +0.6
135,538 + GFF5035 0.45 -0.3
135,538 + GFF5035 0.45 +1.0
135,539 - GFF5035 0.45 -1.2
135,539 - GFF5035 0.45 -0.8
135,539 - GFF5035 0.45 -0.5
135,539 - GFF5035 0.45 +0.4
135,539 - GFF5035 0.45 +0.1
135,539 - GFF5035 0.45 -1.0
135,539 - GFF5035 0.45 -0.8
135,539 - GFF5035 0.45 -1.3

Or see this region's nucleotide sequence