Strain Fitness in Variovorax sp. SCN45 around GFF4998

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4997 and GFF4998 are separated by 67 nucleotidesGFF4998 and GFF4999 are separated by 12 nucleotidesGFF4999 and GFF5000 overlap by 8 nucleotides GFF4997 - hypothetical protein, at 95,088 to 96,749 GFF4997 GFF4998 - L-carnitine dehydratase/bile acid-inducible protein F, at 96,817 to 98,058 GFF4998 GFF4999 - hypothetical protein, at 98,071 to 98,385 GFF4999 GFF5000 - PUTATIVE ZINC PROTEASE PROTEIN, at 98,378 to 99,502 GFF5000 Position (kb) 96 97 98 99Strain fitness (log2 ratio) -2 -1 0 1 2 3at 95.935 kb on + strand, within GFF4997at 95.936 kb on - strand, within GFF4997at 95.936 kb on - strand, within GFF4997at 95.944 kb on + strand, within GFF4997at 95.944 kb on + strand, within GFF4997at 95.944 kb on + strand, within GFF4997at 95.944 kb on + strand, within GFF4997at 95.944 kb on + strand, within GFF4997at 95.944 kb on + strand, within GFF4997at 95.944 kb on + strand, within GFF4997at 95.944 kb on + strand, within GFF4997at 95.945 kb on - strand, within GFF4997at 95.945 kb on - strand, within GFF4997at 95.945 kb on - strand, within GFF4997at 95.945 kb on - strand, within GFF4997at 96.091 kb on + strand, within GFF4997at 96.092 kb on - strand, within GFF4997at 96.092 kb on - strand, within GFF4997at 96.301 kb on + strand, within GFF4997at 96.301 kb on + strand, within GFF4997at 96.301 kb on + strand, within GFF4997at 96.301 kb on + strand, within GFF4997at 96.301 kb on + strand, within GFF4997at 96.301 kb on + strand, within GFF4997at 96.301 kb on + strand, within GFF4997at 96.301 kb on + strand, within GFF4997at 96.301 kb on + strand, within GFF4997at 96.301 kb on + strand, within GFF4997at 96.301 kb on + strand, within GFF4997at 96.301 kb on + strand, within GFF4997at 96.301 kb on + strand, within GFF4997at 96.301 kb on + strand, within GFF4997at 96.301 kb on + strand, within GFF4997at 96.301 kb on + strand, within GFF4997at 96.301 kb on + strand, within GFF4997at 96.302 kb on - strand, within GFF4997at 96.302 kb on - strand, within GFF4997at 96.302 kb on - strand, within GFF4997at 96.302 kb on - strand, within GFF4997at 96.302 kb on - strand, within GFF4997at 96.302 kb on - strand, within GFF4997at 96.302 kb on - strand, within GFF4997at 96.302 kb on - strand, within GFF4997at 96.310 kb on + strand, within GFF4997at 96.310 kb on + strand, within GFF4997at 96.310 kb on + strand, within GFF4997at 96.310 kb on + strand, within GFF4997at 96.310 kb on + strand, within GFF4997at 96.310 kb on + strand, within GFF4997at 96.310 kb on + strand, within GFF4997at 96.311 kb on - strand, within GFF4997at 96.311 kb on - strand, within GFF4997at 96.311 kb on - strand, within GFF4997at 96.311 kb on - strand, within GFF4997at 96.311 kb on - strand, within GFF4997at 96.311 kb on - strand, within GFF4997at 96.311 kb on - strand, within GFF4997at 96.347 kb on + strand, within GFF4997at 96.347 kb on + strand, within GFF4997at 96.347 kb on + strand, within GFF4997at 96.661 kb on + strandat 96.661 kb on + strandat 96.661 kb on + strandat 96.661 kb on + strandat 96.661 kb on + strandat 96.661 kb on + strandat 96.661 kb on + strandat 96.662 kb on - strandat 96.662 kb on - strandat 96.662 kb on - strandat 96.662 kb on - strandat 96.662 kb on - strandat 96.662 kb on - strandat 96.662 kb on - strandat 96.743 kb on + strandat 96.743 kb on + strandat 96.743 kb on + strandat 96.743 kb on + strandat 96.743 kb on + strandat 96.744 kb on - strandat 96.774 kb on + strandat 96.775 kb on - strandat 96.818 kb on + strandat 96.818 kb on + strandat 96.818 kb on + strandat 96.818 kb on + strandat 96.819 kb on - strandat 96.819 kb on - strandat 97.025 kb on + strand, within GFF4998at 97.025 kb on + strand, within GFF4998at 97.026 kb on - strand, within GFF4998at 97.026 kb on - strand, within GFF4998at 97.026 kb on - strand, within GFF4998at 97.058 kb on + strand, within GFF4998at 97.058 kb on + strand, within GFF4998at 97.058 kb on + strand, within GFF4998at 97.058 kb on + strand, within GFF4998at 97.058 kb on + strand, within GFF4998at 97.058 kb on + strand, within GFF4998at 97.058 kb on + strand, within GFF4998at 97.059 kb on - strand, within GFF4998at 97.059 kb on - strand, within GFF4998at 97.059 kb on - strand, within GFF4998at 97.059 kb on - strand, within GFF4998at 97.059 kb on - strand, within GFF4998at 97.059 kb on - strand, within GFF4998at 97.059 kb on - strand, within GFF4998at 97.059 kb on - strand, within GFF4998at 97.059 kb on - strand, within GFF4998at 97.059 kb on - strand, within GFF4998at 97.059 kb on - strand, within GFF4998at 97.059 kb on - strand, within GFF4998at 97.059 kb on - strand, within GFF4998at 97.059 kb on - strand, within GFF4998at 97.059 kb on - strand, within GFF4998at 97.059 kb on - strand, within GFF4998at 97.059 kb on - strand, within GFF4998at 97.059 kb on - strand, within GFF4998at 97.277 kb on + strand, within GFF4998at 97.277 kb on + strand, within GFF4998at 97.278 kb on - strand, within GFF4998at 97.278 kb on - strand, within GFF4998at 97.367 kb on + strand, within GFF4998at 97.367 kb on + strand, within GFF4998at 97.367 kb on + strand, within GFF4998at 97.367 kb on + strand, within GFF4998at 97.367 kb on + strand, within GFF4998at 97.367 kb on + strand, within GFF4998at 97.368 kb on - strand, within GFF4998at 97.368 kb on - strand, within GFF4998at 97.368 kb on - strand, within GFF4998at 97.368 kb on - strand, within GFF4998at 97.368 kb on - strand, within GFF4998at 97.368 kb on - strand, within GFF4998at 97.409 kb on + strand, within GFF4998at 97.409 kb on + strand, within GFF4998at 97.409 kb on + strand, within GFF4998at 97.410 kb on - strand, within GFF4998at 97.410 kb on - strand, within GFF4998at 97.410 kb on - strand, within GFF4998at 97.634 kb on + strand, within GFF4998at 97.925 kb on + strand, within GFF4998at 98.273 kb on + strand, within GFF4999at 98.273 kb on + strand, within GFF4999at 98.273 kb on + strand, within GFF4999at 98.273 kb on + strand, within GFF4999at 98.274 kb on - strand, within GFF4999at 98.274 kb on - strand, within GFF4999at 98.274 kb on - strand, within GFF4999at 98.274 kb on - strand, within GFF4999at 98.274 kb on - strand, within GFF4999at 98.370 kb on + strandat 98.371 kb on - strandat 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.506 kb on - strand, within GFF5000at 98.506 kb on - strand, within GFF5000at 98.506 kb on - strand, within GFF5000at 98.506 kb on - strand, within GFF5000at 98.506 kb on - strand, within GFF5000at 98.506 kb on - strand, within GFF5000at 98.571 kb on + strand, within GFF5000at 98.571 kb on + strand, within GFF5000at 98.571 kb on + strand, within GFF5000at 98.571 kb on + strand, within GFF5000at 98.625 kb on + strand, within GFF5000at 98.626 kb on - strand, within GFF5000at 98.626 kb on - strand, within GFF5000at 98.671 kb on - strand, within GFF5000at 98.671 kb on - strand, within GFF5000at 98.754 kb on + strand, within GFF5000at 98.754 kb on + strand, within GFF5000at 98.754 kb on + strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.830 kb on - strand, within GFF5000at 98.830 kb on - strand, within GFF5000at 98.904 kb on + strand, within GFF5000at 98.904 kb on + strand, within GFF5000at 98.904 kb on + strand, within GFF5000at 98.904 kb on + strand, within GFF5000at 98.904 kb on + strand, within GFF5000at 98.905 kb on - strand, within GFF5000at 98.905 kb on - strand, within GFF5000at 98.905 kb on - strand, within GFF5000at 98.905 kb on - strand, within GFF5000at 98.905 kb on - strand, within GFF5000at 98.905 kb on - strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 99.057 kb on + strand, within GFF5000at 99.057 kb on + strand, within GFF5000at 99.057 kb on + strand, within GFF5000at 99.057 kb on + strand, within GFF5000at 99.057 kb on + strand, within GFF5000at 99.058 kb on - strand, within GFF5000at 99.058 kb on - strand, within GFF5000at 99.058 kb on - strand, within GFF5000at 99.058 kb on - strand, within GFF5000

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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95,935 + GFF4997 0.51 -0.6
95,936 - GFF4997 0.51 +1.0
95,936 - GFF4997 0.51 -0.2
95,944 + GFF4997 0.52 +0.0
95,944 + GFF4997 0.52 +1.8
95,944 + GFF4997 0.52 +0.2
95,944 + GFF4997 0.52 +2.1
95,944 + GFF4997 0.52 -0.4
95,944 + GFF4997 0.52 -0.2
95,944 + GFF4997 0.52 -0.2
95,944 + GFF4997 0.52 -0.7
95,945 - GFF4997 0.52 -0.1
95,945 - GFF4997 0.52 -2.3
95,945 - GFF4997 0.52 -0.4
95,945 - GFF4997 0.52 +0.3
96,091 + GFF4997 0.60 +0.4
96,092 - GFF4997 0.60 -0.6
96,092 - GFF4997 0.60 -1.5
96,301 + GFF4997 0.73 +0.8
96,301 + GFF4997 0.73 +0.2
96,301 + GFF4997 0.73 -0.5
96,301 + GFF4997 0.73 -0.3
96,301 + GFF4997 0.73 -0.2
96,301 + GFF4997 0.73 -0.9
96,301 + GFF4997 0.73 -0.1
96,301 + GFF4997 0.73 +0.4
96,301 + GFF4997 0.73 +1.0
96,301 + GFF4997 0.73 +0.2
96,301 + GFF4997 0.73 -0.3
96,301 + GFF4997 0.73 -0.2
96,301 + GFF4997 0.73 +0.8
96,301 + GFF4997 0.73 +0.6
96,301 + GFF4997 0.73 +1.2
96,301 + GFF4997 0.73 -1.5
96,301 + GFF4997 0.73 +0.0
96,302 - GFF4997 0.73 +0.2
96,302 - GFF4997 0.73 +0.6
96,302 - GFF4997 0.73 -0.0
96,302 - GFF4997 0.73 -0.2
96,302 - GFF4997 0.73 +0.4
96,302 - GFF4997 0.73 +0.3
96,302 - GFF4997 0.73 -0.1
96,302 - GFF4997 0.73 -0.3
96,310 + GFF4997 0.74 +0.2
96,310 + GFF4997 0.74 -0.4
96,310 + GFF4997 0.74 +0.8
96,310 + GFF4997 0.74 -0.0
96,310 + GFF4997 0.74 +0.0
96,310 + GFF4997 0.74 +0.7
96,310 + GFF4997 0.74 -0.5
96,311 - GFF4997 0.74 -0.3
96,311 - GFF4997 0.74 -0.4
96,311 - GFF4997 0.74 -1.0
96,311 - GFF4997 0.74 -1.1
96,311 - GFF4997 0.74 -0.6
96,311 - GFF4997 0.74 -0.5
96,311 - GFF4997 0.74 -1.1
96,347 + GFF4997 0.76 -1.2
96,347 + GFF4997 0.76 +0.3
96,347 + GFF4997 0.76 -1.1
96,661 + +0.2
96,661 + -0.4
96,661 + -0.3
96,661 + -1.2
96,661 + -0.2
96,661 + -0.1
96,661 + -0.1
96,662 - -0.8
96,662 - +1.2
96,662 - +0.0
96,662 - -1.0
96,662 - -0.0
96,662 - -1.2
96,662 - +0.3
96,743 + +0.6
96,743 + -1.0
96,743 + +0.5
96,743 + -1.0
96,743 + -1.8
96,744 - -0.7
96,774 + -0.9
96,775 - +0.2
96,818 + -0.2
96,818 + -0.1
96,818 + +0.8
96,818 + -0.6
96,819 - +1.1
96,819 - -0.1
97,025 + GFF4998 0.17 -0.2
97,025 + GFF4998 0.17 -0.1
97,026 - GFF4998 0.17 +0.6
97,026 - GFF4998 0.17 +0.7
97,026 - GFF4998 0.17 +0.1
97,058 + GFF4998 0.19 -0.4
97,058 + GFF4998 0.19 +1.4
97,058 + GFF4998 0.19 +0.9
97,058 + GFF4998 0.19 -0.0
97,058 + GFF4998 0.19 +0.4
97,058 + GFF4998 0.19 +0.4
97,058 + GFF4998 0.19 -0.9
97,059 - GFF4998 0.19 +0.2
97,059 - GFF4998 0.19 -0.9
97,059 - GFF4998 0.19 -0.6
97,059 - GFF4998 0.19 -0.5
97,059 - GFF4998 0.19 +0.9
97,059 - GFF4998 0.19 -0.2
97,059 - GFF4998 0.19 +0.2
97,059 - GFF4998 0.19 +0.3
97,059 - GFF4998 0.19 +2.0
97,059 - GFF4998 0.19 -0.0
97,059 - GFF4998 0.19 -0.1
97,059 - GFF4998 0.19 -0.3
97,059 - GFF4998 0.19 -0.3
97,059 - GFF4998 0.19 -0.3
97,059 - GFF4998 0.19 -0.6
97,059 - GFF4998 0.19 +0.5
97,059 - GFF4998 0.19 -1.1
97,059 - GFF4998 0.19 -0.7
97,277 + GFF4998 0.37 +0.6
97,277 + GFF4998 0.37 -1.0
97,278 - GFF4998 0.37 +0.0
97,278 - GFF4998 0.37 -0.6
97,367 + GFF4998 0.44 +1.4
97,367 + GFF4998 0.44 +1.2
97,367 + GFF4998 0.44 +0.5
97,367 + GFF4998 0.44 -0.4
97,367 + GFF4998 0.44 -0.1
97,367 + GFF4998 0.44 -0.8
97,368 - GFF4998 0.44 -0.4
97,368 - GFF4998 0.44 +0.5
97,368 - GFF4998 0.44 +0.5
97,368 - GFF4998 0.44 +0.6
97,368 - GFF4998 0.44 -1.5
97,368 - GFF4998 0.44 -0.3
97,409 + GFF4998 0.48 -0.5
97,409 + GFF4998 0.48 +0.5
97,409 + GFF4998 0.48 +1.2
97,410 - GFF4998 0.48 +1.2
97,410 - GFF4998 0.48 -0.3
97,410 - GFF4998 0.48 +0.3
97,634 + GFF4998 0.66 -0.9
97,925 + GFF4998 0.89 -0.8
98,273 + GFF4999 0.64 -0.0
98,273 + GFF4999 0.64 +0.2
98,273 + GFF4999 0.64 +0.5
98,273 + GFF4999 0.64 -0.3
98,274 - GFF4999 0.64 +1.8
98,274 - GFF4999 0.64 -0.0
98,274 - GFF4999 0.64 -0.1
98,274 - GFF4999 0.64 +2.8
98,274 - GFF4999 0.64 +0.5
98,370 + +0.8
98,371 - +0.5
98,505 + GFF5000 0.11 -0.2
98,505 + GFF5000 0.11 -1.2
98,505 + GFF5000 0.11 -0.5
98,505 + GFF5000 0.11 -0.5
98,505 + GFF5000 0.11 +0.4
98,505 + GFF5000 0.11 +2.3
98,505 + GFF5000 0.11 +0.8
98,505 + GFF5000 0.11 -1.7
98,506 - GFF5000 0.11 -0.3
98,506 - GFF5000 0.11 -0.0
98,506 - GFF5000 0.11 -0.0
98,506 - GFF5000 0.11 -0.6
98,506 - GFF5000 0.11 +0.0
98,506 - GFF5000 0.11 -0.2
98,571 + GFF5000 0.17 +0.8
98,571 + GFF5000 0.17 +0.3
98,571 + GFF5000 0.17 +1.2
98,571 + GFF5000 0.17 +0.2
98,625 + GFF5000 0.22 -0.2
98,626 - GFF5000 0.22 -0.4
98,626 - GFF5000 0.22 +0.2
98,671 - GFF5000 0.26 -0.8
98,671 - GFF5000 0.26 -0.1
98,754 + GFF5000 0.33 +0.2
98,754 + GFF5000 0.33 -0.5
98,754 + GFF5000 0.33 -0.6
98,755 - GFF5000 0.34 +0.2
98,755 - GFF5000 0.34 -0.4
98,755 - GFF5000 0.34 -0.5
98,755 - GFF5000 0.34 -0.2
98,755 - GFF5000 0.34 -0.7
98,755 - GFF5000 0.34 -1.5
98,755 - GFF5000 0.34 -0.0
98,830 - GFF5000 0.40 -0.2
98,830 - GFF5000 0.40 -0.8
98,904 + GFF5000 0.47 +1.4
98,904 + GFF5000 0.47 +2.8
98,904 + GFF5000 0.47 -1.2
98,904 + GFF5000 0.47 -0.3
98,904 + GFF5000 0.47 -0.2
98,905 - GFF5000 0.47 -0.1
98,905 - GFF5000 0.47 -0.0
98,905 - GFF5000 0.47 -0.6
98,905 - GFF5000 0.47 -0.9
98,905 - GFF5000 0.47 +0.1
98,905 - GFF5000 0.47 +0.5
98,937 + GFF5000 0.50 -0.4
98,937 + GFF5000 0.50 -1.3
98,937 + GFF5000 0.50 +0.1
98,937 + GFF5000 0.50 +0.4
98,937 + GFF5000 0.50 +0.1
98,937 + GFF5000 0.50 -0.3
98,937 + GFF5000 0.50 +0.0
98,937 + GFF5000 0.50 -0.9
98,938 - GFF5000 0.50 -0.8
98,938 - GFF5000 0.50 +0.0
98,938 - GFF5000 0.50 -0.7
98,938 - GFF5000 0.50 -0.3
98,938 - GFF5000 0.50 -0.8
98,938 - GFF5000 0.50 -1.0
98,938 - GFF5000 0.50 +0.2
98,938 - GFF5000 0.50 +0.9
99,057 + GFF5000 0.60 -0.3
99,057 + GFF5000 0.60 +0.0
99,057 + GFF5000 0.60 -0.9
99,057 + GFF5000 0.60 +0.3
99,057 + GFF5000 0.60 -0.3
99,058 - GFF5000 0.60 -0.5
99,058 - GFF5000 0.60 -0.2
99,058 - GFF5000 0.60 -0.1
99,058 - GFF5000 0.60 +0.5

Or see this region's nucleotide sequence