Strain Fitness in Variovorax sp. SCN45 around GFF4994

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
92,656	+				-0.5
92,657	-				-0.5
92,666	+				-1.3
92,666	+				-0.1
92,666	+				-1.2
92,667	-				+0.4
92,763	-		GFF4993	0.10	-0.2
92,763	-		GFF4993	0.10	+0.1
92,763	-		GFF4993	0.10	-0.3
92,763	-		GFF4993	0.10	+0.2
92,780	+		GFF4993	0.12	+0.4
92,885	+		GFF4993	0.25	-0.3
92,886	-		GFF4993	0.25	-0.4
92,886	-		GFF4993	0.25	-0.0
92,886	-		GFF4993	0.25	-0.9
92,886	-		GFF4993	0.25	+0.6
92,886	-		GFF4993	0.25	-0.1
92,902	-		GFF4993	0.27	-0.5
92,975	+		GFF4993	0.36	+0.2
92,975	+		GFF4993	0.36	-1.0
92,975	+		GFF4993	0.36	-1.2
92,975	+		GFF4993	0.36	+0.4
92,975	+		GFF4993	0.36	-0.1
92,975	+		GFF4993	0.36	+0.6
92,975	+		GFF4993	0.36	-0.5
92,975	+		GFF4993	0.36	-0.9
92,975	+		GFF4993	0.36	+0.2
92,975	+		GFF4993	0.36	-0.6
92,975	+		GFF4993	0.36	+1.4
92,975	+		GFF4993	0.36	-0.3
92,975	+		GFF4993	0.36	+0.2
92,975	+		GFF4993	0.36	-0.1
92,976	-		GFF4993	0.36	+0.5
92,976	-		GFF4993	0.36	-0.6
92,976	-		GFF4993	0.36	-0.2
92,976	-		GFF4993	0.36	-0.2
92,976	-		GFF4993	0.36	-0.9
92,976	-		GFF4993	0.36	-0.0
92,976	-		GFF4993	0.36	-0.2
92,976	-		GFF4993	0.36	-0.1
92,976	-		GFF4993	0.36	-0.3
92,976	-		GFF4993	0.36	-0.1
92,976	-		GFF4993	0.36	+1.6
92,976	-		GFF4993	0.36	-1.5
92,976	-		GFF4993	0.36	+0.5
92,976	-		GFF4993	0.36	-0.1
92,976	-		GFF4993	0.36	+0.6
92,976	-		GFF4993	0.36	+0.4
92,976	-		GFF4993	0.36	-0.4
92,976	-		GFF4993	0.36	+0.7
92,976	-		GFF4993	0.36	+0.5
92,976	-		GFF4993	0.36	-1.2
92,984	+		GFF4993	0.37	+0.0
92,984	+		GFF4993	0.37	+1.4
92,984	+		GFF4993	0.37	+0.0
92,985	-		GFF4993	0.37	+0.5
92,985	-		GFF4993	0.37	-0.2
92,985	-		GFF4993	0.37	-0.1
92,985	-		GFF4993	0.37	-0.9
92,985	-		GFF4993	0.37	+0.0
92,985	-		GFF4993	0.37	-0.5
92,985	-		GFF4993	0.37	-2.1
93,086	+		GFF4993	0.49	-0.8
93,087	-		GFF4993	0.49	-0.3
93,087	-		GFF4993	0.49	+0.2
93,087	-		GFF4993	0.49	+0.3
93,098	+		GFF4993	0.50	-0.3
93,098	+		GFF4993	0.50	-0.1
93,098	+		GFF4993	0.50	-0.8
93,099	-		GFF4993	0.50	+0.2
93,099	-		GFF4993	0.50	-0.2
93,099	-		GFF4993	0.50	+0.4
93,099	-		GFF4993	0.50	-0.4
93,099	-		GFF4993	0.50	-0.8
93,099	-		GFF4993	0.50	+0.4
93,099	-		GFF4993	0.50	+3.4
93,099	-		GFF4993	0.50	+0.3
93,113	+		GFF4993	0.52	+0.1
93,113	+		GFF4993	0.52	+1.8
93,113	+		GFF4993	0.52	-0.8
93,114	-		GFF4993	0.52	+0.8
93,114	-		GFF4993	0.52	-0.5
93,114	-		GFF4993	0.52	-0.6
93,180	+		GFF4993	0.60	+1.8
93,290	+		GFF4993	0.73	+0.2
93,290	+		GFF4993	0.73	-0.4
93,291	-		GFF4993	0.73	-0.3
93,291	-		GFF4993	0.73	-0.3
93,291	-		GFF4993	0.73	-0.1
93,374	+		GFF4993	0.83	-0.2
93,374	+		GFF4993	0.83	+0.5
93,374	+		GFF4993	0.83	+1.2
93,375	-		GFF4993	0.83	-0.6
93,375	-		GFF4993	0.83	+0.1
93,375	-		GFF4993	0.83	+0.1
93,375	-		GFF4993	0.83	-0.2
93,375	-		GFF4993	0.83	+0.2
93,537	+				-0.2
93,547	+				-0.1
93,559	+				-1.4
93,559	+				+0.8
93,559	+				-0.1
93,559	+				+1.2
93,560	-				-1.4
93,560	-				-0.2
93,560	-				+0.3
93,560	-				+0.2
93,688	+		GFF4994	0.35	+0.5
93,688	+		GFF4994	0.35	+0.4
93,688	+		GFF4994	0.35	+0.1
93,688	+		GFF4994	0.35	+0.9
93,688	+		GFF4994	0.35	+0.3
93,688	+		GFF4994	0.35	-0.2
93,688	+		GFF4994	0.35	-1.3
93,688	+		GFF4994	0.35	-1.8
93,688	+		GFF4994	0.35	-0.8
93,689	-		GFF4994	0.35	+0.8
93,689	-		GFF4994	0.35	-0.2
93,689	-		GFF4994	0.35	-0.1
93,689	-		GFF4994	0.35	+0.4
93,689	-		GFF4994	0.35	+0.5
93,820	-		GFF4994	0.86	+1.5
93,823	+		GFF4994	0.87	-1.4
93,823	+		GFF4994	0.87	-0.1
93,823	+		GFF4994	0.87	-0.4
93,823	+		GFF4994	0.87	-0.2
93,823	+		GFF4994	0.87	+0.5
93,823	+		GFF4994	0.87	-0.2
93,823	+		GFF4994	0.87	-0.3
93,823	+		GFF4994	0.87	+0.2
93,823	+		GFF4994	0.87	+0.6
93,823	+		GFF4994	0.87	+0.6
93,823	+		GFF4994	0.87	+0.2
93,823	+		GFF4994	0.87	-0.4
93,823	+		GFF4994	0.87	+0.4
93,823	+		GFF4994	0.87	+0.2
93,823	+		GFF4994	0.87	-1.0
93,823	+		GFF4994	0.87	+0.5
93,823	+		GFF4994	0.87	+1.8
93,823	+		GFF4994	0.87	+0.2
93,823	+		GFF4994	0.87	-0.2
93,823	+		GFF4994	0.87	-0.0
93,824	-		GFF4994	0.88	+1.2
93,824	-		GFF4994	0.88	-0.6
93,824	-		GFF4994	0.88	-0.5
93,824	-		GFF4994	0.88	+0.3
93,824	-		GFF4994	0.88	+0.3
93,824	-		GFF4994	0.88	-0.0
93,824	-		GFF4994	0.88	-0.6
93,824	-		GFF4994	0.88	-0.8
93,824	-		GFF4994	0.88	-1.7
94,051	+		GFF4995	0.20	-0.0
94,051	+		GFF4995	0.20	-0.2
94,051	+		GFF4995	0.20	-0.5
94,051	+		GFF4995	0.20	-0.5
94,051	+		GFF4995	0.20	-0.9
94,051	+		GFF4995	0.20	-0.5
94,051	+		GFF4995	0.20	-0.3
94,051	+		GFF4995	0.20	+0.8
94,051	+		GFF4995	0.20	+1.2
94,051	+		GFF4995	0.20	+0.2
94,051	+		GFF4995	0.20	-1.4
94,051	+		GFF4995	0.20	+0.1
94,051	+		GFF4995	0.20	-0.0
94,051	+		GFF4995	0.20	+0.1
94,051	+		GFF4995	0.20	-0.5
94,052	-		GFF4995	0.20	-1.2
94,052	-		GFF4995	0.20	+1.0
94,052	-		GFF4995	0.20	-1.3
94,052	-		GFF4995	0.20	+0.2
94,052	-		GFF4995	0.20	-0.5
94,052	-		GFF4995	0.20	-0.6
94,052	-		GFF4995	0.20	-1.0
94,052	-		GFF4995	0.20	-0.2
94,052	-		GFF4995	0.20	+0.7
94,052	-		GFF4995	0.20	-0.8
94,072	+		GFF4995	0.22	-1.2
94,072	+		GFF4995	0.22	-0.9
94,073	-		GFF4995	0.23	-0.5
94,073	-		GFF4995	0.23	-0.5
94,146	+		GFF4995	0.30	+0.3
94,146	+		GFF4995	0.30	-0.9
94,147	-		GFF4995	0.31	+1.2
94,147	-		GFF4995	0.31	-0.1
94,147	-		GFF4995	0.31	-0.3
94,237	+		GFF4995	0.40	-0.6
94,237	+		GFF4995	0.40	-1.4
94,237	+		GFF4995	0.40	+0.0
94,237	+		GFF4995	0.40	-0.2
94,237	+		GFF4995	0.40	-0.5
94,237	+		GFF4995	0.40	+0.1
94,237	+		GFF4995	0.40	+0.2
94,237	+		GFF4995	0.40	-1.2
94,237	+		GFF4995	0.40	+0.6
94,237	+		GFF4995	0.40	+0.6
94,237	+		GFF4995	0.40	-1.4
94,237	+		GFF4995	0.40	+0.8
94,237	+		GFF4995	0.40	-0.4
94,237	+		GFF4995	0.40	-0.8
94,237	+		GFF4995	0.40	-0.8
94,237	+		GFF4995	0.40	-0.7
94,237	+		GFF4995	0.40	-0.7
94,237	+		GFF4995	0.40	+0.6
94,237	+		GFF4995	0.40	-1.0
94,238	-		GFF4995	0.41	-0.2
94,238	-		GFF4995	0.41	-1.4
94,238	-		GFF4995	0.41	+0.6
94,238	-		GFF4995	0.41	-1.3
94,238	-		GFF4995	0.41	+0.4
94,238	-		GFF4995	0.41	-0.3
94,238	-		GFF4995	0.41	+0.4
94,238	-		GFF4995	0.41	-0.3
94,238	-		GFF4995	0.41	+0.2
94,238	-		GFF4995	0.41	+0.2
94,238	-		GFF4995	0.41	-2.0
94,238	-		GFF4995	0.41	+0.3
94,238	-		GFF4995	0.41	-1.0
94,238	-		GFF4995	0.41	-1.2
94,238	-		GFF4995	0.41	-0.2
94,238	-		GFF4995	0.41	-0.5
94,238	-		GFF4995	0.41	-1.1
94,238	-		GFF4995	0.41	-0.5
94,238	-		GFF4995	0.41	-0.2
94,238	-		GFF4995	0.41	+0.0
94,238	-		GFF4995	0.41	-0.8
94,238	-		GFF4995	0.41	-0.8
94,238	-		GFF4995	0.41	+1.0
94,238	-		GFF4995	0.41	-0.8
94,238	-		GFF4995	0.41	-0.1
94,238	-		GFF4995	0.41	-0.7
94,238	-		GFF4995	0.41	-0.2
94,411	+		GFF4995	0.59	+0.1
94,411	+		GFF4995	0.59	-1.2
94,412	-		GFF4995	0.60	-1.4
94,412	-		GFF4995	0.60	-0.3
94,412	-		GFF4995	0.60	-0.1
94,432	+		GFF4995	0.62	-0.6
94,432	+		GFF4995	0.62	-0.1
94,432	+		GFF4995	0.62	-0.3
94,433	-		GFF4995	0.62	-0.7
94,433	-		GFF4995	0.62	+0.0
94,433	-		GFF4995	0.62	-0.5
94,433	-		GFF4995	0.62	-0.5
94,456	+		GFF4995	0.64	+0.9
94,456	+		GFF4995	0.64	-0.3
94,456	+		GFF4995	0.64	-0.5
94,456	+		GFF4995	0.64	-1.0
94,456	+		GFF4995	0.64	-0.1
94,456	+		GFF4995	0.64	-0.5
94,456	+		GFF4995	0.64	-0.7
94,456	+		GFF4995	0.64	-1.2
94,456	+		GFF4995	0.64	+1.2
94,456	+		GFF4995	0.64	+0.8
94,456	+		GFF4995	0.64	+0.3
94,456	+		GFF4995	0.64	+0.2
94,457	-		GFF4995	0.64	-0.8
94,457	-		GFF4995	0.64	-0.2
94,457	-		GFF4995	0.64	+0.8
94,457	-		GFF4995	0.64	-0.1
94,457	-		GFF4995	0.64	-0.1
94,457	-		GFF4995	0.64	-0.2
94,457	-		GFF4995	0.64	+0.2
94,457	-		GFF4995	0.64	+1.8
94,520	-		GFF4995	0.71	+0.5
94,520	-		GFF4995	0.71	-0.6
94,520	-		GFF4995	0.71	-0.1
94,520	-		GFF4995	0.71	+1.8
94,567	+		GFF4995	0.77	+0.2
94,567	+		GFF4995	0.77	-0.4
94,567	+		GFF4995	0.77	+0.1
94,567	+		GFF4995	0.77	-0.7
94,567	+		GFF4995	0.77	+0.8
94,567	+		GFF4995	0.77	+0.4
94,567	+		GFF4995	0.77	+0.6
94,567	+		GFF4995	0.77	-1.5
94,568	-		GFF4995	0.77	-1.2
94,568	-		GFF4995	0.77	-0.0
94,568	-		GFF4995	0.77	+0.5
94,568	-		GFF4995	0.77	-0.1
94,568	-		GFF4995	0.77	-0.4
94,568	-		GFF4995	0.77	-0.2
94,568	-		GFF4995	0.77	+1.6
94,674	+		GFF4995	0.88	-0.6
94,674	+		GFF4995	0.88	-1.3
94,674	+		GFF4995	0.88	+0.1
94,674	+		GFF4995	0.88	-0.3
94,675	-		GFF4995	0.88	-0.6
94,678	+		GFF4995	0.89	+0.6
94,678	+		GFF4995	0.89	+0.0
94,678	+		GFF4995	0.89	-0.9
94,678	+		GFF4995	0.89	-0.0
94,678	+		GFF4995	0.89	+0.0
94,678	+		GFF4995	0.89	+0.6
94,678	+		GFF4995	0.89	-1.3
94,678	+		GFF4995	0.89	-0.6
94,678	+		GFF4995	0.89	-0.1
94,679	-		GFF4995	0.89	-0.7
94,679	-		GFF4995	0.89	+1.1
94,679	-		GFF4995	0.89	-0.4
94,679	-		GFF4995	0.89	+0.5
94,841	+				+0.3
94,841	+				+0.2