Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4960 and GFF4961 overlap by 4 nucleotides GFF4961 and GFF4962 are separated by 7 nucleotides GFF4962 and GFF4963 are separated by 76 nucleotides
GFF4960 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 60,789 to 61,544
GFF4960
GFF4961 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 61,541 to 62,260
GFF4961
GFF4962 - Multidrug resistance transporter, Bcr/CflA family, at 62,268 to 63,476
GFF4962
GFF4963 - Transcriptional regulator, AraC family, at 63,553 to 64,503
GFF4963
Position (kb) 62
63
64 Strain fitness (log2 ratio) -1
0
1
2 at 62.132 kb on + strand, within GFF4961 at 62.132 kb on + strand, within GFF4961 at 62.132 kb on + strand, within GFF4961 at 62.132 kb on + strand, within GFF4961 at 62.133 kb on - strand, within GFF4961 at 62.133 kb on - strand, within GFF4961 at 62.258 kb on + strand at 62.259 kb on - strand at 62.259 kb on - strand at 62.259 kb on - strand at 62.524 kb on + strand, within GFF4962 at 62.599 kb on - strand, within GFF4962 at 62.599 kb on - strand, within GFF4962 at 62.599 kb on - strand, within GFF4962 at 62.726 kb on - strand, within GFF4962 at 62.726 kb on - strand, within GFF4962 at 62.782 kb on + strand, within GFF4962 at 62.783 kb on - strand, within GFF4962 at 62.860 kb on + strand, within GFF4962 at 63.047 kb on + strand, within GFF4962 at 63.047 kb on + strand, within GFF4962 at 63.048 kb on - strand, within GFF4962 at 63.049 kb on + strand, within GFF4962 at 63.049 kb on + strand, within GFF4962 at 63.049 kb on + strand, within GFF4962 at 63.049 kb on + strand, within GFF4962 at 63.050 kb on - strand, within GFF4962 at 63.050 kb on - strand, within GFF4962 at 63.050 kb on - strand, within GFF4962 at 63.050 kb on - strand, within GFF4962 at 63.097 kb on + strand, within GFF4962 at 63.097 kb on + strand, within GFF4962 at 63.097 kb on + strand, within GFF4962 at 63.098 kb on - strand, within GFF4962 at 63.098 kb on - strand, within GFF4962 at 63.098 kb on - strand, within GFF4962 at 63.391 kb on + strand at 63.391 kb on + strand at 63.391 kb on + strand at 63.391 kb on + strand at 63.391 kb on + strand at 63.391 kb on + strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.652 kb on + strand, within GFF4963 at 63.863 kb on - strand, within GFF4963 at 63.863 kb on - strand, within GFF4963 at 64.312 kb on + strand, within GFF4963 at 64.313 kb on - strand, within GFF4963 at 64.467 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 62,132 + GFF4961 0.82 -1.2 62,132 + GFF4961 0.82 +0.2 62,132 + GFF4961 0.82 -0.5 62,132 + GFF4961 0.82 -0.2 62,133 - GFF4961 0.82 +0.9 62,133 - GFF4961 0.82 -0.6 62,258 + -0.4 62,259 - -0.8 62,259 - -0.3 62,259 - +0.6 62,524 + GFF4962 0.21 +0.4 62,599 - GFF4962 0.27 -0.4 62,599 - GFF4962 0.27 +1.6 62,599 - GFF4962 0.27 -0.5 62,726 - GFF4962 0.38 -0.4 62,726 - GFF4962 0.38 -0.6 62,782 + GFF4962 0.43 +0.4 62,783 - GFF4962 0.43 +0.1 62,860 + GFF4962 0.49 +0.8 63,047 + GFF4962 0.64 +1.0 63,047 + GFF4962 0.64 -1.3 63,048 - GFF4962 0.65 -0.0 63,049 + GFF4962 0.65 -0.1 63,049 + GFF4962 0.65 +0.5 63,049 + GFF4962 0.65 +0.4 63,049 + GFF4962 0.65 +0.3 63,050 - GFF4962 0.65 +0.0 63,050 - GFF4962 0.65 -0.0 63,050 - GFF4962 0.65 +0.6 63,050 - GFF4962 0.65 +1.2 63,097 + GFF4962 0.69 -0.6 63,097 + GFF4962 0.69 -0.4 63,097 + GFF4962 0.69 -0.5 63,098 - GFF4962 0.69 +0.2 63,098 - GFF4962 0.69 +0.9 63,098 - GFF4962 0.69 -0.5 63,391 + -1.1 63,391 + +0.3 63,391 + +1.0 63,391 + -0.8 63,391 + +0.1 63,391 + +0.5 63,392 - -0.3 63,392 - -0.4 63,392 - -0.2 63,392 - -0.5 63,392 - -0.2 63,392 - -0.9 63,392 - +0.9 63,392 - -0.5 63,392 - -1.3 63,652 + GFF4963 0.10 -0.5 63,863 - GFF4963 0.33 +2.4 63,863 - GFF4963 0.33 +0.1 64,312 + GFF4963 0.80 +0.6 64,313 - GFF4963 0.80 -0.8 64,467 + +0.0
Or see this region's nucleotide sequence