Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4949 and GFF4950 overlap by 4 nucleotides GFF4950 and GFF4951 overlap by 4 nucleotides
GFF4949 - ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 44,889 to 46,412
GFF4949
GFF4950 - ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose), at 46,409 to 47,437
GFF4950
GFF4951 - Uncharacterized oxidoreductase YdjG, at 47,434 to 48,438
GFF4951
Position (kb) 46
47
48 Strain fitness (log2 ratio) -2
-1
0
1
2 at 45.483 kb on + strand, within GFF4949 at 45.483 kb on + strand, within GFF4949 at 45.484 kb on - strand, within GFF4949 at 45.484 kb on - strand, within GFF4949 at 45.484 kb on - strand, within GFF4949 at 45.509 kb on - strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.634 kb on - strand, within GFF4949 at 45.634 kb on - strand, within GFF4949 at 45.867 kb on + strand, within GFF4949 at 45.867 kb on + strand, within GFF4949 at 45.868 kb on - strand, within GFF4949 at 45.897 kb on + strand, within GFF4949 at 45.898 kb on - strand, within GFF4949 at 45.898 kb on - strand, within GFF4949 at 45.930 kb on + strand, within GFF4949 at 46.309 kb on + strand at 46.574 kb on + strand, within GFF4950 at 47.054 kb on + strand, within GFF4950 at 47.084 kb on + strand, within GFF4950 at 47.084 kb on + strand, within GFF4950 at 47.166 kb on - strand, within GFF4950 at 47.166 kb on - strand, within GFF4950 at 47.166 kb on - strand, within GFF4950 at 47.836 kb on + strand, within GFF4951 at 47.837 kb on - strand, within GFF4951 at 47.848 kb on + strand, within GFF4951 at 47.848 kb on + strand, within GFF4951 at 47.849 kb on - strand, within GFF4951 at 47.849 kb on - strand, within GFF4951 at 47.849 kb on - strand, within GFF4951 at 47.978 kb on - strand, within GFF4951 at 47.978 kb on - strand, within GFF4951 at 48.091 kb on + strand, within GFF4951 at 48.314 kb on + strand, within GFF4951 at 48.314 kb on + strand, within GFF4951
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 45,483 + GFF4949 0.39 -0.2 45,483 + GFF4949 0.39 -0.5 45,484 - GFF4949 0.39 -0.7 45,484 - GFF4949 0.39 +0.5 45,484 - GFF4949 0.39 -0.5 45,509 - GFF4949 0.41 +0.2 45,630 + GFF4949 0.49 +0.2 45,630 + GFF4949 0.49 +0.2 45,630 + GFF4949 0.49 -1.0 45,630 + GFF4949 0.49 -0.6 45,630 + GFF4949 0.49 -0.4 45,631 - GFF4949 0.49 -0.0 45,631 - GFF4949 0.49 -1.0 45,631 - GFF4949 0.49 -1.0 45,631 - GFF4949 0.49 -0.1 45,631 - GFF4949 0.49 +0.4 45,631 - GFF4949 0.49 -0.3 45,634 - GFF4949 0.49 -0.8 45,634 - GFF4949 0.49 -1.0 45,867 + GFF4949 0.64 -0.6 45,867 + GFF4949 0.64 -0.0 45,868 - GFF4949 0.64 -0.4 45,897 + GFF4949 0.66 -0.2 45,898 - GFF4949 0.66 +0.2 45,898 - GFF4949 0.66 +0.8 45,930 + GFF4949 0.68 -0.6 46,309 + -0.5 46,574 + GFF4950 0.16 -1.6 47,054 + GFF4950 0.63 -0.5 47,084 + GFF4950 0.66 -1.1 47,084 + GFF4950 0.66 -0.0 47,166 - GFF4950 0.74 -0.5 47,166 - GFF4950 0.74 -2.0 47,166 - GFF4950 0.74 +0.1 47,836 + GFF4951 0.40 -0.2 47,837 - GFF4951 0.40 +0.1 47,848 + GFF4951 0.41 -0.0 47,848 + GFF4951 0.41 -0.5 47,849 - GFF4951 0.41 -0.9 47,849 - GFF4951 0.41 +0.0 47,849 - GFF4951 0.41 -0.3 47,978 - GFF4951 0.54 -0.5 47,978 - GFF4951 0.54 -1.9 48,091 + GFF4951 0.65 -0.6 48,314 + GFF4951 0.88 -0.3 48,314 + GFF4951 0.88 +1.8
Or see this region's nucleotide sequence