Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4814 and GFF4815 are separated by 7 nucleotides GFF4815 and GFF4816 are separated by 54 nucleotides
GFF4814 - Conserved hypothetical protein potentially related to ribose or hydroxymethylpyrimidine metabolism, at 185,104 to 186,291
GFF4814
GFF4815 - Glucose-fructose oxidoreductase (EC 1.1.99.28), at 186,299 to 187,474
GFF4815
GFF4816 - FIG01074109: hypothetical protein, at 187,529 to 188,959
GFF4816
Position (kb) 186
187
188 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 185.306 kb on + strand, within GFF4814 at 185.307 kb on - strand, within GFF4814 at 185.514 kb on - strand, within GFF4814 at 185.534 kb on + strand, within GFF4814 at 185.534 kb on + strand, within GFF4814 at 185.534 kb on + strand, within GFF4814 at 185.534 kb on + strand, within GFF4814 at 185.534 kb on + strand, within GFF4814 at 185.535 kb on - strand, within GFF4814 at 185.535 kb on - strand, within GFF4814 at 185.535 kb on - strand, within GFF4814 at 185.535 kb on - strand, within GFF4814 at 185.769 kb on - strand, within GFF4814 at 185.780 kb on + strand, within GFF4814 at 186.243 kb on - strand at 186.405 kb on + strand at 186.468 kb on + strand, within GFF4815 at 186.468 kb on + strand, within GFF4815 at 186.750 kb on + strand, within GFF4815 at 186.750 kb on + strand, within GFF4815 at 186.751 kb on - strand, within GFF4815 at 187.147 kb on - strand, within GFF4815 at 187.534 kb on - strand at 187.669 kb on - strand at 187.737 kb on + strand, within GFF4816 at 187.738 kb on - strand, within GFF4816 at 187.849 kb on - strand, within GFF4816 at 187.849 kb on - strand, within GFF4816 at 187.911 kb on + strand, within GFF4816 at 187.912 kb on - strand, within GFF4816 at 187.912 kb on - strand, within GFF4816 at 188.164 kb on - strand, within GFF4816 at 188.164 kb on - strand, within GFF4816
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 185,306 + GFF4814 0.17 +1.6 185,307 - GFF4814 0.17 +0.0 185,514 - GFF4814 0.35 -1.8 185,534 + GFF4814 0.36 +0.1 185,534 + GFF4814 0.36 -0.0 185,534 + GFF4814 0.36 -1.7 185,534 + GFF4814 0.36 +0.3 185,534 + GFF4814 0.36 -0.3 185,535 - GFF4814 0.36 +0.3 185,535 - GFF4814 0.36 +0.2 185,535 - GFF4814 0.36 -0.5 185,535 - GFF4814 0.36 -0.4 185,769 - GFF4814 0.56 -0.0 185,780 + GFF4814 0.57 -0.7 186,243 - +0.4 186,405 + -0.0 186,468 + GFF4815 0.14 -1.4 186,468 + GFF4815 0.14 -0.0 186,750 + GFF4815 0.38 -0.4 186,750 + GFF4815 0.38 -0.6 186,751 - GFF4815 0.38 -1.1 187,147 - GFF4815 0.72 -0.3 187,534 - -0.4 187,669 - -0.3 187,737 + GFF4816 0.15 +0.1 187,738 - GFF4816 0.15 +3.0 187,849 - GFF4816 0.22 -0.0 187,849 - GFF4816 0.22 +0.1 187,911 + GFF4816 0.27 -0.9 187,912 - GFF4816 0.27 +0.0 187,912 - GFF4816 0.27 +0.0 188,164 - GFF4816 0.44 -0.3 188,164 - GFF4816 0.44 +0.5
Or see this region's nucleotide sequence