Strain Fitness in Variovorax sp. SCN45 around GFF4796

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4794 and GFF4795 overlap by 4 nucleotidesGFF4795 and GFF4796 are separated by 116 nucleotidesGFF4796 and GFF4797 are separated by 22 nucleotidesGFF4797 and GFF4798 overlap by 4 nucleotides GFF4794 - Ectoine hydroxylase (EC 1.17.-.-), at 164,528 to 165,403 GFF4794 GFF4795 - predicted biotin regulatory protein BioR (GntR family), at 165,400 to 166,107 GFF4795 GFF4796 - L-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.16), at 166,224 to 167,183 GFF4796 GFF4797 - ABC-type antimicrobial peptide transport system, ATPase component, at 167,206 to 167,856 GFF4797 GFF4798 - tRNA dimethylallyltransferase (EC 2.5.1.75), at 167,853 to 168,890 GFF4798 Position (kb) 166 167 168Strain fitness (log2 ratio) -1 0 1 2at 165.289 kb on - strand, within GFF4794at 165.289 kb on - strand, within GFF4794at 165.289 kb on - strand, within GFF4794at 165.357 kb on + strandat 165.357 kb on + strandat 165.357 kb on + strandat 165.358 kb on - strandat 165.686 kb on + strand, within GFF4795at 165.686 kb on + strand, within GFF4795at 165.686 kb on + strand, within GFF4795at 165.686 kb on + strand, within GFF4795at 165.686 kb on + strand, within GFF4795at 165.686 kb on + strand, within GFF4795at 165.687 kb on - strand, within GFF4795at 165.687 kb on - strand, within GFF4795at 165.687 kb on - strand, within GFF4795at 165.687 kb on - strand, within GFF4795at 165.845 kb on + strand, within GFF4795at 165.846 kb on - strand, within GFF4795at 166.052 kb on + strandat 166.135 kb on + strandat 166.163 kb on + strandat 166.164 kb on - strandat 166.164 kb on - strandat 166.231 kb on + strandat 166.231 kb on + strandat 166.231 kb on + strandat 166.231 kb on + strandat 166.231 kb on + strandat 166.231 kb on + strandat 166.231 kb on + strandat 166.231 kb on + strandat 166.231 kb on + strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.232 kb on - strandat 166.235 kb on + strandat 166.235 kb on + strandat 166.235 kb on + strandat 166.235 kb on + strandat 166.235 kb on + strandat 166.235 kb on + strandat 166.236 kb on - strandat 166.236 kb on - strandat 166.236 kb on - strandat 166.236 kb on - strandat 166.236 kb on - strandat 166.239 kb on + strandat 166.239 kb on + strandat 166.239 kb on + strandat 166.239 kb on + strandat 166.240 kb on - strandat 166.240 kb on - strandat 166.240 kb on - strandat 166.240 kb on - strandat 166.240 kb on - strandat 166.567 kb on - strand, within GFF4796at 166.567 kb on - strand, within GFF4796at 166.587 kb on + strand, within GFF4796at 166.587 kb on + strand, within GFF4796at 166.587 kb on + strand, within GFF4796at 166.587 kb on + strand, within GFF4796at 166.587 kb on + strand, within GFF4796at 166.588 kb on - strand, within GFF4796at 166.588 kb on - strand, within GFF4796at 166.666 kb on - strand, within GFF4796at 166.666 kb on - strand, within GFF4796at 166.666 kb on - strand, within GFF4796at 166.824 kb on + strand, within GFF4796at 166.825 kb on - strand, within GFF4796at 166.944 kb on + strand, within GFF4796at 166.944 kb on + strand, within GFF4796at 166.944 kb on + strand, within GFF4796at 166.944 kb on + strand, within GFF4796at 166.945 kb on - strand, within GFF4796at 166.945 kb on - strand, within GFF4796at 166.945 kb on - strand, within GFF4796at 166.945 kb on - strand, within GFF4796at 166.945 kb on - strand, within GFF4796at 167.822 kb on + strandat 167.822 kb on + strandat 167.905 kb on + strandat 167.906 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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165,289 - GFF4794 0.87 -0.8
165,289 - GFF4794 0.87 +1.4
165,289 - GFF4794 0.87 +0.8
165,357 + +0.5
165,357 + -1.0
165,357 + +1.4
165,358 - +0.1
165,686 + GFF4795 0.40 -0.6
165,686 + GFF4795 0.40 -0.8
165,686 + GFF4795 0.40 +0.2
165,686 + GFF4795 0.40 +0.6
165,686 + GFF4795 0.40 +1.4
165,686 + GFF4795 0.40 +0.7
165,687 - GFF4795 0.41 -0.3
165,687 - GFF4795 0.41 -1.0
165,687 - GFF4795 0.41 -0.4
165,687 - GFF4795 0.41 -0.4
165,845 + GFF4795 0.63 +0.2
165,846 - GFF4795 0.63 -0.6
166,052 + +0.5
166,135 + +0.1
166,163 + +2.0
166,164 - +0.2
166,164 - -0.3
166,231 + +0.1
166,231 + -1.3
166,231 + +2.2
166,231 + +0.4
166,231 + +0.2
166,231 + -0.3
166,231 + +0.9
166,231 + -0.6
166,231 + -0.3
166,232 - -0.2
166,232 - -0.4
166,232 - +0.7
166,232 - -0.4
166,232 - +0.1
166,232 - -0.6
166,232 - -0.6
166,232 - -0.4
166,232 - -0.3
166,232 - -0.7
166,232 - +0.4
166,232 - -0.6
166,232 - +1.1
166,232 - +0.4
166,235 + +0.6
166,235 + -0.1
166,235 + -1.2
166,235 + +1.1
166,235 + -1.2
166,235 + +0.2
166,236 - -0.4
166,236 - +0.2
166,236 - -0.2
166,236 - +0.7
166,236 - +0.8
166,239 + -0.1
166,239 + -0.6
166,239 + -0.2
166,239 + -1.0
166,240 - -1.1
166,240 - -0.5
166,240 - -0.2
166,240 - +0.2
166,240 - -0.4
166,567 - GFF4796 0.36 -1.0
166,567 - GFF4796 0.36 -0.4
166,587 + GFF4796 0.38 -0.4
166,587 + GFF4796 0.38 -0.8
166,587 + GFF4796 0.38 -0.6
166,587 + GFF4796 0.38 +0.5
166,587 + GFF4796 0.38 -0.7
166,588 - GFF4796 0.38 -0.2
166,588 - GFF4796 0.38 +0.4
166,666 - GFF4796 0.46 -0.6
166,666 - GFF4796 0.46 +0.3
166,666 - GFF4796 0.46 -0.6
166,824 + GFF4796 0.62 -0.7
166,825 - GFF4796 0.63 -0.7
166,944 + GFF4796 0.75 -0.0
166,944 + GFF4796 0.75 -0.4
166,944 + GFF4796 0.75 -1.2
166,944 + GFF4796 0.75 +0.4
166,945 - GFF4796 0.75 -0.2
166,945 - GFF4796 0.75 -0.2
166,945 - GFF4796 0.75 -1.2
166,945 - GFF4796 0.75 +0.4
166,945 - GFF4796 0.75 -1.2
167,822 + +0.8
167,822 + +0.3
167,905 + +1.4
167,906 - -0.3

Or see this region's nucleotide sequence