Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4781 and GFF4782 overlap by 1 nucleotides GFF4782 and GFF4783 are separated by 108 nucleotides
GFF4781 - AttH component of AttEFGH ABC transport system, at 148,402 to 149,469
GFF4781
GFF4782 - Pyridoxal-5'-phosphate-dependent enzyme beta superfamily (fold type II), at 149,469 to 150,545
GFF4782
GFF4783 - Penicillin acylase (EC 3.5.1.11), at 150,654 to 153,146
GFF4783
Position (kb) 149
150
151 Strain fitness (log2 ratio) -2
-1
0
1 at 148.919 kb on + strand, within GFF4781 at 148.919 kb on + strand, within GFF4781 at 148.920 kb on - strand, within GFF4781 at 148.920 kb on - strand, within GFF4781 at 148.922 kb on + strand, within GFF4781 at 148.922 kb on + strand, within GFF4781 at 148.923 kb on - strand, within GFF4781 at 148.923 kb on - strand, within GFF4781 at 148.923 kb on - strand, within GFF4781 at 148.923 kb on - strand, within GFF4781 at 148.925 kb on + strand, within GFF4781 at 148.925 kb on + strand, within GFF4781 at 148.925 kb on + strand, within GFF4781 at 148.926 kb on - strand, within GFF4781 at 148.926 kb on - strand, within GFF4781 at 148.926 kb on - strand, within GFF4781 at 148.926 kb on - strand, within GFF4781 at 149.048 kb on + strand, within GFF4781 at 149.049 kb on - strand, within GFF4781 at 149.264 kb on + strand, within GFF4781 at 149.321 kb on + strand, within GFF4781 at 149.321 kb on + strand, within GFF4781 at 149.321 kb on + strand, within GFF4781 at 149.321 kb on + strand, within GFF4781 at 149.321 kb on + strand, within GFF4781 at 149.321 kb on + strand, within GFF4781 at 149.322 kb on - strand, within GFF4781 at 149.532 kb on + strand at 149.532 kb on + strand at 149.564 kb on - strand at 149.851 kb on + strand, within GFF4782 at 149.851 kb on + strand, within GFF4782 at 149.851 kb on + strand, within GFF4782 at 149.852 kb on - strand, within GFF4782 at 149.921 kb on - strand, within GFF4782 at 150.064 kb on + strand, within GFF4782 at 150.064 kb on + strand, within GFF4782 at 150.064 kb on + strand, within GFF4782 at 150.065 kb on - strand, within GFF4782 at 150.082 kb on + strand, within GFF4782 at 150.082 kb on + strand, within GFF4782 at 150.082 kb on + strand, within GFF4782 at 150.083 kb on - strand, within GFF4782 at 150.083 kb on - strand, within GFF4782 at 150.083 kb on - strand, within GFF4782 at 150.124 kb on + strand, within GFF4782 at 150.124 kb on + strand, within GFF4782 at 150.124 kb on + strand, within GFF4782 at 150.124 kb on + strand, within GFF4782 at 150.166 kb on + strand, within GFF4782 at 150.167 kb on - strand, within GFF4782 at 150.250 kb on + strand, within GFF4782 at 150.250 kb on + strand, within GFF4782 at 150.332 kb on - strand, within GFF4782 at 150.332 kb on - strand, within GFF4782 at 150.400 kb on + strand, within GFF4782 at 150.401 kb on - strand, within GFF4782 at 150.401 kb on - strand, within GFF4782 at 150.472 kb on + strand at 150.472 kb on + strand at 150.472 kb on + strand at 150.534 kb on + strand at 150.534 kb on + strand at 150.534 kb on + strand at 150.545 kb on + strand at 150.560 kb on - strand at 150.560 kb on - strand at 150.579 kb on + strand at 150.579 kb on + strand at 150.613 kb on + strand at 150.858 kb on + strand at 150.858 kb on + strand at 150.859 kb on - strand at 150.974 kb on - strand, within GFF4783 at 151.020 kb on + strand, within GFF4783 at 151.020 kb on + strand, within GFF4783 at 151.021 kb on - strand, within GFF4783 at 151.021 kb on - strand, within GFF4783 at 151.038 kb on + strand, within GFF4783 at 151.093 kb on - strand, within GFF4783 at 151.447 kb on + strand, within GFF4783 at 151.448 kb on - strand, within GFF4783
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 148,919 + GFF4781 0.48 -0.4 148,919 + GFF4781 0.48 -0.4 148,920 - GFF4781 0.49 +0.3 148,920 - GFF4781 0.49 -0.0 148,922 + GFF4781 0.49 +0.4 148,922 + GFF4781 0.49 -1.1 148,923 - GFF4781 0.49 -0.6 148,923 - GFF4781 0.49 +0.9 148,923 - GFF4781 0.49 -0.1 148,923 - GFF4781 0.49 -0.9 148,925 + GFF4781 0.49 +1.0 148,925 + GFF4781 0.49 -0.7 148,925 + GFF4781 0.49 +1.4 148,926 - GFF4781 0.49 -0.7 148,926 - GFF4781 0.49 -0.1 148,926 - GFF4781 0.49 -1.9 148,926 - GFF4781 0.49 -0.2 149,048 + GFF4781 0.60 -1.3 149,049 - GFF4781 0.61 -0.7 149,264 + GFF4781 0.81 -0.9 149,321 + GFF4781 0.86 +0.2 149,321 + GFF4781 0.86 -1.6 149,321 + GFF4781 0.86 +0.2 149,321 + GFF4781 0.86 +0.1 149,321 + GFF4781 0.86 +0.1 149,321 + GFF4781 0.86 +0.1 149,322 - GFF4781 0.86 +0.0 149,532 + -0.2 149,532 + +0.7 149,564 - +0.7 149,851 + GFF4782 0.35 +0.8 149,851 + GFF4782 0.35 -0.2 149,851 + GFF4782 0.35 -0.1 149,852 - GFF4782 0.36 -0.9 149,921 - GFF4782 0.42 +0.3 150,064 + GFF4782 0.55 +0.1 150,064 + GFF4782 0.55 +0.7 150,064 + GFF4782 0.55 -0.0 150,065 - GFF4782 0.55 +0.0 150,082 + GFF4782 0.57 -1.4 150,082 + GFF4782 0.57 -0.4 150,082 + GFF4782 0.57 +0.8 150,083 - GFF4782 0.57 -0.1 150,083 - GFF4782 0.57 -0.3 150,083 - GFF4782 0.57 -0.6 150,124 + GFF4782 0.61 -1.2 150,124 + GFF4782 0.61 -1.0 150,124 + GFF4782 0.61 +0.1 150,124 + GFF4782 0.61 -1.5 150,166 + GFF4782 0.65 -0.5 150,167 - GFF4782 0.65 +0.8 150,250 + GFF4782 0.73 -0.2 150,250 + GFF4782 0.73 -1.2 150,332 - GFF4782 0.80 -1.7 150,332 - GFF4782 0.80 -1.0 150,400 + GFF4782 0.86 -1.1 150,401 - GFF4782 0.87 -0.9 150,401 - GFF4782 0.87 +0.3 150,472 + -0.2 150,472 + +0.3 150,472 + +1.1 150,534 + -0.8 150,534 + +0.1 150,534 + -0.2 150,545 + -0.2 150,560 - -0.6 150,560 - +0.3 150,579 + -0.2 150,579 + -0.3 150,613 + -0.3 150,858 + +0.4 150,858 + -0.3 150,859 - +0.6 150,974 - GFF4783 0.13 -0.8 151,020 + GFF4783 0.15 +0.3 151,020 + GFF4783 0.15 -0.4 151,021 - GFF4783 0.15 +0.3 151,021 - GFF4783 0.15 +0.1 151,038 + GFF4783 0.15 -0.2 151,093 - GFF4783 0.18 +0.7 151,447 + GFF4783 0.32 -0.8 151,448 - GFF4783 0.32 +0.2
Or see this region's nucleotide sequence