Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4648 and GFF4649 are separated by 132 nucleotides GFF4649 and GFF4650 are separated by 49 nucleotides GFF4650 and GFF4651 are separated by 94 nucleotides
GFF4648 - Inner-membrane proton/drug antiporter (MSF type) of tripartite multidrug efflux system, at 4,016 to 5,548
GFF4648
GFF4649 - Iron-chelator utilization protein, at 5,681 to 6,520
GFF4649
GFF4650 - Transcriptional regulator, PadR family, at 6,570 to 7,145
GFF4650
GFF4651 - Kynurenine 3-monooxygenase (EC 1.14.13.9), at 7,240 to 8,388
GFF4651
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1 at 4.762 kb on + strand, within GFF4648 at 4.762 kb on + strand, within GFF4648 at 4.763 kb on - strand, within GFF4648 at 4.763 kb on - strand, within GFF4648 at 4.925 kb on + strand, within GFF4648 at 4.926 kb on - strand, within GFF4648 at 4.926 kb on - strand, within GFF4648 at 4.926 kb on - strand, within GFF4648 at 5.057 kb on + strand, within GFF4648 at 5.058 kb on - strand, within GFF4648 at 5.429 kb on + strand at 6.228 kb on + strand, within GFF4649 at 6.228 kb on + strand, within GFF4649 at 6.228 kb on + strand, within GFF4649 at 6.229 kb on - strand, within GFF4649 at 6.229 kb on - strand, within GFF4649 at 6.229 kb on - strand, within GFF4649 at 6.505 kb on + strand at 6.505 kb on + strand at 6.505 kb on + strand at 6.505 kb on + strand at 6.505 kb on + strand at 6.506 kb on - strand at 6.506 kb on - strand at 6.824 kb on - strand, within GFF4650 at 6.865 kb on + strand, within GFF4650 at 6.866 kb on - strand, within GFF4650 at 6.866 kb on - strand, within GFF4650 at 6.922 kb on + strand, within GFF4650 at 6.922 kb on + strand, within GFF4650 at 6.922 kb on + strand, within GFF4650 at 6.922 kb on + strand, within GFF4650 at 6.922 kb on + strand, within GFF4650 at 6.923 kb on - strand, within GFF4650
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 4,762 + GFF4648 0.49 -0.4 4,762 + GFF4648 0.49 +0.6 4,763 - GFF4648 0.49 +0.4 4,763 - GFF4648 0.49 -0.2 4,925 + GFF4648 0.59 -0.4 4,926 - GFF4648 0.59 -0.6 4,926 - GFF4648 0.59 -0.2 4,926 - GFF4648 0.59 +0.7 5,057 + GFF4648 0.68 +0.0 5,058 - GFF4648 0.68 -0.9 5,429 + -0.6 6,228 + GFF4649 0.65 +0.4 6,228 + GFF4649 0.65 -0.7 6,228 + GFF4649 0.65 -0.3 6,229 - GFF4649 0.65 -0.5 6,229 - GFF4649 0.65 -1.8 6,229 - GFF4649 0.65 -0.2 6,505 + -1.0 6,505 + -0.3 6,505 + -0.3 6,505 + -1.2 6,505 + -0.5 6,506 - -0.4 6,506 - -0.2 6,824 - GFF4650 0.44 -1.6 6,865 + GFF4650 0.51 -0.2 6,866 - GFF4650 0.51 +0.1 6,866 - GFF4650 0.51 -0.8 6,922 + GFF4650 0.61 -0.8 6,922 + GFF4650 0.61 +0.1 6,922 + GFF4650 0.61 +1.4 6,922 + GFF4650 0.61 +1.0 6,922 + GFF4650 0.61 -0.3 6,923 - GFF4650 0.61 +0.6
Or see this region's nucleotide sequence