Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4621 and GFF4622 are separated by 17 nucleotides GFF4622 and GFF4623 are separated by 251 nucleotides GFF4623 and GFF4624 are separated by 77 nucleotides
GFF4621 - Hydroxycarboxylate dehydrogenase (NADP+) HcxB, at 263,021 to 264,076
GFF4621
GFF4622 - Permease of the drug/metabolite transporter (DMT) superfamily, at 264,094 to 264,915
GFF4622
GFF4623 - Transcriptional regulator, AcrR family, at 265,167 to 265,817
GFF4623
GFF4624 - N-acetylglutamate kinase (EC 2.7.2.8), at 265,895 to 266,788
GFF4624
Position (kb) 264
265 Strain fitness (log2 ratio) -1
0
1 at 263.180 kb on + strand, within GFF4621 at 263.181 kb on - strand, within GFF4621 at 263.183 kb on - strand, within GFF4621 at 263.320 kb on - strand, within GFF4621 at 263.555 kb on + strand, within GFF4621 at 263.555 kb on + strand, within GFF4621 at 263.555 kb on + strand, within GFF4621 at 263.556 kb on - strand, within GFF4621 at 263.556 kb on - strand, within GFF4621 at 263.556 kb on - strand, within GFF4621 at 263.627 kb on + strand, within GFF4621 at 263.789 kb on - strand, within GFF4621 at 263.849 kb on - strand, within GFF4621 at 264.075 kb on - strand at 264.095 kb on + strand at 264.096 kb on - strand at 264.377 kb on - strand, within GFF4622 at 264.377 kb on - strand, within GFF4622 at 264.377 kb on - strand, within GFF4622 at 264.377 kb on - strand, within GFF4622 at 264.470 kb on + strand, within GFF4622 at 264.470 kb on + strand, within GFF4622 at 264.551 kb on + strand, within GFF4622 at 264.552 kb on - strand, within GFF4622 at 264.699 kb on - strand, within GFF4622 at 264.722 kb on + strand, within GFF4622 at 264.723 kb on - strand, within GFF4622 at 264.924 kb on + strand at 264.924 kb on + strand at 264.924 kb on + strand at 264.924 kb on + strand at 264.924 kb on + strand at 264.924 kb on + strand at 264.925 kb on - strand at 264.925 kb on - strand at 264.925 kb on - strand at 264.925 kb on - strand at 264.925 kb on - strand at 264.925 kb on - strand at 264.925 kb on - strand at 264.925 kb on - strand at 264.925 kb on - strand at 265.067 kb on + strand at 265.115 kb on + strand at 265.115 kb on + strand at 265.115 kb on + strand at 265.115 kb on + strand at 265.115 kb on + strand at 265.115 kb on + strand at 265.115 kb on + strand at 265.116 kb on - strand at 265.612 kb on + strand, within GFF4623 at 265.612 kb on + strand, within GFF4623 at 265.613 kb on - strand, within GFF4623 at 265.782 kb on + strand at 265.783 kb on - strand at 265.783 kb on - strand at 265.837 kb on + strand at 265.837 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 263,180 + GFF4621 0.15 -0.8 263,181 - GFF4621 0.15 -0.2 263,183 - GFF4621 0.15 +0.2 263,320 - GFF4621 0.28 +1.7 263,555 + GFF4621 0.51 +0.4 263,555 + GFF4621 0.51 -0.6 263,555 + GFF4621 0.51 -0.1 263,556 - GFF4621 0.51 +0.7 263,556 - GFF4621 0.51 -0.0 263,556 - GFF4621 0.51 -0.3 263,627 + GFF4621 0.57 -0.9 263,789 - GFF4621 0.73 -0.1 263,849 - GFF4621 0.78 +0.1 264,075 - -0.1 264,095 + -0.6 264,096 - +0.3 264,377 - GFF4622 0.34 +0.1 264,377 - GFF4622 0.34 +0.1 264,377 - GFF4622 0.34 -0.5 264,377 - GFF4622 0.34 -0.7 264,470 + GFF4622 0.46 -0.1 264,470 + GFF4622 0.46 -0.2 264,551 + GFF4622 0.56 +0.7 264,552 - GFF4622 0.56 -0.1 264,699 - GFF4622 0.74 +1.0 264,722 + GFF4622 0.76 -1.2 264,723 - GFF4622 0.77 -0.0 264,924 + -1.2 264,924 + -0.8 264,924 + +0.3 264,924 + -1.1 264,924 + +0.4 264,924 + -0.1 264,925 - -0.9 264,925 - -0.3 264,925 - -0.3 264,925 - -0.5 264,925 - +1.7 264,925 - +0.7 264,925 - -0.3 264,925 - +0.0 264,925 - -1.1 265,067 + +0.4 265,115 + -0.6 265,115 + +0.2 265,115 + -0.0 265,115 + +0.1 265,115 + +0.1 265,115 + +1.4 265,115 + +0.2 265,116 - -0.0 265,612 + GFF4623 0.68 +1.1 265,612 + GFF4623 0.68 +0.4 265,613 - GFF4623 0.69 +0.0 265,782 + -0.1 265,783 - -0.0 265,783 - -0.6 265,837 + -0.6 265,837 + +0.2
Or see this region's nucleotide sequence