Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4562 and GFF4563 are separated by 129 nucleotides GFF4563 and GFF4564 are separated by 32 nucleotides GFF4564 and GFF4565 are separated by 89 nucleotides
GFF4562 - Biotin synthase related domain containing protein, at 197,873 to 199,126
GFF4562
GFF4563 - Ferredoxin, 2Fe-2S, at 199,256 to 199,615
GFF4563
GFF4564 - hypothetical protein, at 199,648 to 200,250
GFF4564
GFF4565 - GGDEF domain protein, at 200,340 to 201,827
GFF4565
Position (kb) 199
200
201 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 198.648 kb on + strand, within GFF4562 at 198.708 kb on + strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.831 kb on + strand, within GFF4562 at 198.912 kb on + strand, within GFF4562 at 198.912 kb on + strand, within GFF4562 at 198.913 kb on - strand, within GFF4562 at 198.913 kb on - strand, within GFF4562 at 198.913 kb on - strand, within GFF4562 at 198.913 kb on - strand, within GFF4562 at 198.924 kb on + strand, within GFF4562 at 198.924 kb on + strand, within GFF4562 at 198.924 kb on + strand, within GFF4562 at 198.925 kb on - strand, within GFF4562 at 198.925 kb on - strand, within GFF4562 at 198.925 kb on - strand, within GFF4562 at 198.925 kb on - strand, within GFF4562 at 198.925 kb on - strand, within GFF4562 at 198.984 kb on + strand, within GFF4562 at 198.984 kb on + strand, within GFF4562 at 198.984 kb on + strand, within GFF4562 at 198.984 kb on + strand, within GFF4562 at 198.984 kb on + strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 199.081 kb on - strand at 199.081 kb on - strand at 199.081 kb on - strand at 199.142 kb on + strand at 199.143 kb on - strand at 199.147 kb on + strand at 199.147 kb on + strand at 199.147 kb on + strand at 199.148 kb on - strand at 199.148 kb on - strand at 199.148 kb on - strand at 199.153 kb on + strand at 199.154 kb on - strand at 199.156 kb on - strand at 199.156 kb on - strand at 199.156 kb on - strand at 199.190 kb on + strand at 199.191 kb on - strand at 199.241 kb on + strand at 199.242 kb on - strand at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.768 kb on + strand, within GFF4564 at 199.768 kb on + strand, within GFF4564 at 199.768 kb on + strand, within GFF4564 at 199.768 kb on + strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 200.074 kb on + strand, within GFF4564 at 200.075 kb on - strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.239 kb on + strand at 200.239 kb on + strand at 200.240 kb on - strand at 200.240 kb on - strand at 200.240 kb on - strand at 200.240 kb on - strand at 200.240 kb on - strand at 200.249 kb on - strand at 200.269 kb on + strand at 200.272 kb on + strand at 200.273 kb on - strand at 200.273 kb on - strand at 200.273 kb on - strand at 200.273 kb on - strand at 200.273 kb on - strand at 200.276 kb on + strand at 200.276 kb on + strand at 200.276 kb on + strand at 200.276 kb on + strand at 200.276 kb on + strand at 200.276 kb on + strand at 200.276 kb on + strand at 200.277 kb on - strand at 200.277 kb on - strand at 200.277 kb on - strand at 200.277 kb on - strand at 200.277 kb on - strand at 200.277 kb on - strand at 200.277 kb on - strand at 200.277 kb on - strand at 200.277 kb on - strand at 200.277 kb on - strand at 200.277 kb on - strand at 200.433 kb on + strand at 200.433 kb on + strand at 200.496 kb on + strand, within GFF4565 at 200.496 kb on + strand, within GFF4565 at 200.497 kb on - strand, within GFF4565 at 200.715 kb on + strand, within GFF4565 at 200.715 kb on + strand, within GFF4565 at 200.715 kb on + strand, within GFF4565 at 200.715 kb on + strand, within GFF4565 at 200.716 kb on - strand, within GFF4565 at 200.716 kb on - strand, within GFF4565 at 200.716 kb on - strand, within GFF4565 at 200.716 kb on - strand, within GFF4565 at 200.716 kb on - strand, within GFF4565 at 200.862 kb on + strand, within GFF4565 at 200.862 kb on + strand, within GFF4565 at 200.862 kb on + strand, within GFF4565 at 200.862 kb on + strand, within GFF4565 at 200.862 kb on + strand, within GFF4565 at 200.862 kb on + strand, within GFF4565 at 200.862 kb on + strand, within GFF4565 at 200.862 kb on + strand, within GFF4565 at 200.862 kb on + strand, within GFF4565 at 200.863 kb on - strand, within GFF4565 at 200.863 kb on - strand, within GFF4565 at 200.863 kb on - strand, within GFF4565 at 200.863 kb on - strand, within GFF4565 at 200.863 kb on - strand, within GFF4565 at 200.863 kb on - strand, within GFF4565 at 200.863 kb on - strand, within GFF4565 at 200.863 kb on - strand, within GFF4565 at 201.195 kb on + strand, within GFF4565 at 201.195 kb on + strand, within GFF4565 at 201.196 kb on - strand, within GFF4565 at 201.196 kb on - strand, within GFF4565
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 198,648 + GFF4562 0.62 -0.9 198,708 + GFF4562 0.67 -0.4 198,709 - GFF4562 0.67 -1.3 198,709 - GFF4562 0.67 +0.1 198,709 - GFF4562 0.67 -0.5 198,709 - GFF4562 0.67 -0.0 198,709 - GFF4562 0.67 -0.2 198,709 - GFF4562 0.67 +0.6 198,709 - GFF4562 0.67 -0.1 198,831 + GFF4562 0.76 -1.1 198,912 + GFF4562 0.83 -0.9 198,912 + GFF4562 0.83 -0.4 198,913 - GFF4562 0.83 +1.1 198,913 - GFF4562 0.83 -0.3 198,913 - GFF4562 0.83 +1.7 198,913 - GFF4562 0.83 +0.1 198,924 + GFF4562 0.84 -0.1 198,924 + GFF4562 0.84 -0.3 198,924 + GFF4562 0.84 -1.9 198,925 - GFF4562 0.84 +0.7 198,925 - GFF4562 0.84 +0.2 198,925 - GFF4562 0.84 +0.7 198,925 - GFF4562 0.84 -0.0 198,925 - GFF4562 0.84 -1.9 198,984 + GFF4562 0.89 -0.4 198,984 + GFF4562 0.89 +3.3 198,984 + GFF4562 0.89 -0.5 198,984 + GFF4562 0.89 -0.8 198,984 + GFF4562 0.89 -0.1 198,985 - GFF4562 0.89 +1.0 198,985 - GFF4562 0.89 +0.6 198,985 - GFF4562 0.89 +0.1 198,985 - GFF4562 0.89 -1.6 198,985 - GFF4562 0.89 -0.9 198,985 - GFF4562 0.89 +0.8 198,985 - GFF4562 0.89 -0.3 198,985 - GFF4562 0.89 -0.2 198,985 - GFF4562 0.89 -0.3 199,081 - +0.3 199,081 - -0.1 199,081 - -0.0 199,142 + -0.5 199,143 - -0.7 199,147 + +0.2 199,147 + +0.4 199,147 + -1.5 199,148 - -0.9 199,148 - -0.2 199,148 - -0.2 199,153 + -0.5 199,154 - -0.1 199,156 - -0.1 199,156 - -0.2 199,156 - -0.2 199,190 + -0.0 199,191 - -2.1 199,241 + +0.3 199,242 - -0.5 199,394 + GFF4563 0.38 -0.3 199,394 + GFF4563 0.38 -0.0 199,394 + GFF4563 0.38 +0.0 199,394 + GFF4563 0.38 -0.6 199,394 + GFF4563 0.38 +1.2 199,394 + GFF4563 0.38 +1.4 199,394 + GFF4563 0.38 -0.3 199,394 + GFF4563 0.38 -0.2 199,395 - GFF4563 0.39 -0.2 199,395 - GFF4563 0.39 -0.1 199,395 - GFF4563 0.39 -0.8 199,395 - GFF4563 0.39 -0.3 199,395 - GFF4563 0.39 +0.3 199,395 - GFF4563 0.39 +1.3 199,395 - GFF4563 0.39 -0.9 199,395 - GFF4563 0.39 -0.6 199,395 - GFF4563 0.39 +0.7 199,395 - GFF4563 0.39 -0.1 199,395 - GFF4563 0.39 -0.9 199,395 - GFF4563 0.39 +0.1 199,400 + GFF4563 0.40 +1.7 199,400 + GFF4563 0.40 +0.7 199,400 + GFF4563 0.40 +1.1 199,400 + GFF4563 0.40 -0.2 199,400 + GFF4563 0.40 +0.4 199,400 + GFF4563 0.40 -0.4 199,400 + GFF4563 0.40 -0.3 199,401 - GFF4563 0.40 -0.5 199,401 - GFF4563 0.40 -0.8 199,401 - GFF4563 0.40 -0.1 199,401 - GFF4563 0.40 -0.2 199,401 - GFF4563 0.40 -2.0 199,401 - GFF4563 0.40 +0.2 199,401 - GFF4563 0.40 +0.5 199,401 - GFF4563 0.40 +1.7 199,401 - GFF4563 0.40 -0.2 199,401 - GFF4563 0.40 -0.5 199,768 + GFF4564 0.20 -1.5 199,768 + GFF4564 0.20 -0.3 199,768 + GFF4564 0.20 +0.6 199,768 + GFF4564 0.20 +1.4 199,769 - GFF4564 0.20 +0.3 199,769 - GFF4564 0.20 +0.3 199,769 - GFF4564 0.20 -0.5 199,769 - GFF4564 0.20 -1.5 199,769 - GFF4564 0.20 +0.2 199,769 - GFF4564 0.20 +0.3 199,769 - GFF4564 0.20 -0.3 199,769 - GFF4564 0.20 +0.2 199,972 + GFF4564 0.54 -1.3 199,972 + GFF4564 0.54 -0.2 199,972 + GFF4564 0.54 -0.4 199,972 + GFF4564 0.54 +1.0 199,972 + GFF4564 0.54 -0.2 199,972 + GFF4564 0.54 -0.9 199,972 + GFF4564 0.54 +0.2 199,973 - GFF4564 0.54 +0.8 199,973 - GFF4564 0.54 +0.4 199,973 - GFF4564 0.54 -0.9 199,973 - GFF4564 0.54 +0.5 199,973 - GFF4564 0.54 -0.2 199,973 - GFF4564 0.54 +0.1 199,973 - GFF4564 0.54 +0.1 199,973 - GFF4564 0.54 -0.3 200,074 + GFF4564 0.71 +0.6 200,075 - GFF4564 0.71 -0.4 200,116 + GFF4564 0.78 -0.4 200,116 + GFF4564 0.78 +0.4 200,116 + GFF4564 0.78 +0.9 200,116 + GFF4564 0.78 +1.3 200,116 + GFF4564 0.78 -0.1 200,116 + GFF4564 0.78 -0.5 200,116 + GFF4564 0.78 +0.2 200,116 + GFF4564 0.78 +0.9 200,116 + GFF4564 0.78 +0.5 200,116 + GFF4564 0.78 +2.7 200,116 + GFF4564 0.78 +0.7 200,117 - GFF4564 0.78 -1.6 200,117 - GFF4564 0.78 -0.5 200,117 - GFF4564 0.78 +0.1 200,117 - GFF4564 0.78 -0.3 200,117 - GFF4564 0.78 +0.4 200,117 - GFF4564 0.78 +0.6 200,117 - GFF4564 0.78 -0.4 200,117 - GFF4564 0.78 +0.2 200,117 - GFF4564 0.78 +1.7 200,117 - GFF4564 0.78 -0.5 200,117 - GFF4564 0.78 -0.4 200,117 - GFF4564 0.78 -0.1 200,117 - GFF4564 0.78 -0.1 200,117 - GFF4564 0.78 -0.5 200,239 + -0.7 200,239 + -0.3 200,240 - +0.1 200,240 - -0.9 200,240 - -0.8 200,240 - -1.3 200,240 - -0.3 200,249 - -0.3 200,269 + -1.2 200,272 + +0.0 200,273 - +0.1 200,273 - +0.2 200,273 - +0.1 200,273 - -0.2 200,273 - -0.1 200,276 + +0.4 200,276 + +0.6 200,276 + -0.8 200,276 + -0.6 200,276 + -0.2 200,276 + +0.7 200,276 + -1.0 200,277 - +0.1 200,277 - -0.6 200,277 - -1.1 200,277 - -0.3 200,277 - +0.3 200,277 - -0.8 200,277 - +0.0 200,277 - -0.6 200,277 - -0.4 200,277 - -0.3 200,277 - -0.4 200,433 + -0.2 200,433 + +0.5 200,496 + GFF4565 0.10 -1.3 200,496 + GFF4565 0.10 -0.3 200,497 - GFF4565 0.11 -0.2 200,715 + GFF4565 0.25 -0.9 200,715 + GFF4565 0.25 -0.4 200,715 + GFF4565 0.25 -0.3 200,715 + GFF4565 0.25 +0.1 200,716 - GFF4565 0.25 +0.7 200,716 - GFF4565 0.25 -0.2 200,716 - GFF4565 0.25 +0.1 200,716 - GFF4565 0.25 +0.9 200,716 - GFF4565 0.25 +2.7 200,862 + GFF4565 0.35 -2.0 200,862 + GFF4565 0.35 -0.5 200,862 + GFF4565 0.35 +0.2 200,862 + GFF4565 0.35 -0.3 200,862 + GFF4565 0.35 +0.9 200,862 + GFF4565 0.35 +0.0 200,862 + GFF4565 0.35 +0.1 200,862 + GFF4565 0.35 +0.0 200,862 + GFF4565 0.35 -0.4 200,863 - GFF4565 0.35 -0.2 200,863 - GFF4565 0.35 -0.2 200,863 - GFF4565 0.35 -0.1 200,863 - GFF4565 0.35 -0.5 200,863 - GFF4565 0.35 -1.5 200,863 - GFF4565 0.35 +0.1 200,863 - GFF4565 0.35 +0.0 200,863 - GFF4565 0.35 +1.3 201,195 + GFF4565 0.57 -0.7 201,195 + GFF4565 0.57 +0.9 201,196 - GFF4565 0.58 +0.1 201,196 - GFF4565 0.58 +0.1
Or see this region's nucleotide sequence