Strain Fitness in Variovorax sp. SCN45 around GFF454

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF452 and GFF453 are separated by 97 nucleotidesGFF453 and GFF454 overlap by 4 nucleotidesGFF454 and GFF455 are separated by 303 nucleotides GFF452 - Chloride channel protein, at 490,329 to 492,044 GFF452 GFF453 - hypothetical protein, at 492,142 to 492,366 GFF453 GFF454 - Z-ring-associated protein ZapA, at 492,363 to 492,707 GFF454 GFF455 - Uncharacterized UPF0721 integral membrane protein, at 493,011 to 493,838 GFF455 Position (kb) 492 493Strain fitness (log2 ratio) -2 -1 0 1 2at 491.448 kb on + strand, within GFF452at 491.449 kb on - strand, within GFF452at 491.538 kb on + strand, within GFF452at 491.538 kb on + strand, within GFF452at 491.539 kb on - strand, within GFF452at 491.539 kb on - strand, within GFF452at 491.539 kb on - strand, within GFF452at 491.580 kb on + strand, within GFF452at 491.581 kb on - strand, within GFF452at 491.616 kb on + strand, within GFF452at 491.616 kb on + strand, within GFF452at 491.616 kb on + strand, within GFF452at 491.616 kb on + strand, within GFF452at 491.616 kb on + strand, within GFF452at 491.616 kb on + strand, within GFF452at 491.616 kb on + strand, within GFF452at 491.617 kb on - strand, within GFF452at 491.617 kb on - strand, within GFF452at 491.617 kb on - strand, within GFF452at 491.617 kb on - strand, within GFF452at 491.617 kb on - strand, within GFF452at 491.772 kb on + strand, within GFF452at 491.772 kb on + strand, within GFF452at 491.772 kb on + strand, within GFF452at 491.772 kb on + strand, within GFF452at 491.772 kb on + strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.779 kb on - strand, within GFF452at 491.779 kb on - strand, within GFF452at 491.779 kb on - strand, within GFF452at 492.024 kb on + strandat 492.024 kb on + strandat 492.024 kb on + strandat 492.024 kb on + strandat 492.024 kb on + strandat 492.024 kb on + strandat 492.024 kb on + strandat 492.024 kb on + strandat 492.024 kb on + strandat 492.025 kb on - strandat 492.025 kb on - strandat 492.025 kb on - strandat 492.025 kb on - strandat 492.025 kb on - strandat 492.025 kb on - strandat 492.025 kb on - strandat 492.025 kb on - strandat 492.025 kb on - strandat 492.043 kb on - strandat 492.043 kb on - strandat 492.043 kb on - strandat 492.043 kb on - strandat 492.088 kb on - strandat 492.128 kb on + strandat 492.128 kb on + strandat 492.128 kb on + strandat 492.128 kb on + strandat 492.129 kb on - strandat 492.129 kb on - strandat 492.129 kb on - strandat 492.379 kb on + strandat 492.379 kb on + strandat 492.379 kb on + strandat 492.380 kb on - strandat 492.380 kb on - strandat 492.399 kb on + strand, within GFF454at 492.399 kb on + strand, within GFF454at 492.399 kb on + strand, within GFF454at 492.399 kb on + strand, within GFF454at 492.400 kb on - strand, within GFF454at 492.400 kb on - strand, within GFF454at 492.400 kb on - strand, within GFF454at 492.400 kb on - strand, within GFF454at 492.592 kb on + strand, within GFF454at 492.592 kb on + strand, within GFF454at 492.592 kb on + strand, within GFF454at 492.592 kb on + strand, within GFF454at 492.592 kb on + strand, within GFF454at 492.593 kb on - strand, within GFF454at 492.626 kb on + strand, within GFF454at 492.626 kb on + strand, within GFF454at 492.626 kb on + strand, within GFF454at 492.627 kb on - strand, within GFF454at 492.738 kb on + strandat 492.774 kb on + strandat 492.774 kb on + strandat 492.775 kb on - strandat 492.775 kb on - strandat 492.775 kb on - strandat 492.812 kb on + strandat 492.812 kb on + strandat 492.812 kb on + strandat 492.812 kb on + strandat 492.813 kb on - strandat 492.813 kb on - strandat 492.813 kb on - strandat 492.813 kb on - strandat 492.813 kb on - strandat 492.813 kb on - strandat 492.813 kb on - strandat 492.820 kb on + strandat 492.821 kb on - strandat 492.911 kb on + strandat 493.002 kb on + strandat 493.003 kb on - strandat 493.620 kb on + strand, within GFF455at 493.620 kb on + strand, within GFF455at 493.620 kb on + strand, within GFF455at 493.620 kb on + strand, within GFF455at 493.621 kb on - strand, within GFF455at 493.621 kb on - strand, within GFF455at 493.621 kb on - strand, within GFF455at 493.671 kb on + strand, within GFF455at 493.671 kb on + strand, within GFF455at 493.671 kb on + strand, within GFF455at 493.672 kb on - strand, within GFF455at 493.672 kb on - strand, within GFF455at 493.672 kb on - strand, within GFF455

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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491,448 + GFF452 0.65 +1.0
491,449 - GFF452 0.65 +0.3
491,538 + GFF452 0.70 +0.1
491,538 + GFF452 0.70 -1.3
491,539 - GFF452 0.71 +0.4
491,539 - GFF452 0.71 -0.7
491,539 - GFF452 0.71 +0.8
491,580 + GFF452 0.73 -0.4
491,581 - GFF452 0.73 -0.5
491,616 + GFF452 0.75 -0.2
491,616 + GFF452 0.75 -0.1
491,616 + GFF452 0.75 -0.4
491,616 + GFF452 0.75 +1.0
491,616 + GFF452 0.75 -2.3
491,616 + GFF452 0.75 +0.2
491,616 + GFF452 0.75 +0.7
491,617 - GFF452 0.75 +1.0
491,617 - GFF452 0.75 -0.5
491,617 - GFF452 0.75 +0.0
491,617 - GFF452 0.75 -0.2
491,617 - GFF452 0.75 -0.0
491,772 + GFF452 0.84 +0.6
491,772 + GFF452 0.84 -0.3
491,772 + GFF452 0.84 -0.7
491,772 + GFF452 0.84 +0.7
491,772 + GFF452 0.84 +0.9
491,773 - GFF452 0.84 -0.2
491,773 - GFF452 0.84 -0.0
491,773 - GFF452 0.84 -0.3
491,773 - GFF452 0.84 -0.2
491,773 - GFF452 0.84 -0.3
491,773 - GFF452 0.84 +0.3
491,773 - GFF452 0.84 -1.0
491,773 - GFF452 0.84 -0.5
491,773 - GFF452 0.84 +0.6
491,773 - GFF452 0.84 -0.4
491,778 + GFF452 0.84 -0.7
491,778 + GFF452 0.84 -0.1
491,778 + GFF452 0.84 -1.0
491,778 + GFF452 0.84 +0.3
491,778 + GFF452 0.84 -0.2
491,778 + GFF452 0.84 -1.0
491,778 + GFF452 0.84 +0.1
491,778 + GFF452 0.84 +0.2
491,778 + GFF452 0.84 +0.7
491,778 + GFF452 0.84 +0.2
491,779 - GFF452 0.84 -0.5
491,779 - GFF452 0.84 -0.5
491,779 - GFF452 0.84 -0.4
492,024 + -0.6
492,024 + -1.3
492,024 + -0.1
492,024 + +1.6
492,024 + +0.4
492,024 + -0.0
492,024 + +0.5
492,024 + -0.6
492,024 + -0.8
492,025 - -0.3
492,025 - +0.3
492,025 - +0.4
492,025 - +1.0
492,025 - -1.5
492,025 - -0.4
492,025 - +0.7
492,025 - +0.1
492,025 - -0.4
492,043 - +0.7
492,043 - -0.3
492,043 - +1.8
492,043 - +0.0
492,088 - -0.4
492,128 + -0.5
492,128 + +0.1
492,128 + +0.2
492,128 + +0.2
492,129 - -1.4
492,129 - +0.1
492,129 - +0.2
492,379 + -0.4
492,379 + -0.0
492,379 + -0.8
492,380 - +0.1
492,380 - +0.2
492,399 + GFF454 0.10 +0.1
492,399 + GFF454 0.10 -0.4
492,399 + GFF454 0.10 -0.7
492,399 + GFF454 0.10 +0.6
492,400 - GFF454 0.11 -1.7
492,400 - GFF454 0.11 -0.3
492,400 - GFF454 0.11 -0.7
492,400 - GFF454 0.11 -0.7
492,592 + GFF454 0.66 -0.2
492,592 + GFF454 0.66 +1.8
492,592 + GFF454 0.66 -1.3
492,592 + GFF454 0.66 +0.8
492,592 + GFF454 0.66 -1.2
492,593 - GFF454 0.67 -0.0
492,626 + GFF454 0.76 -0.6
492,626 + GFF454 0.76 -1.3
492,626 + GFF454 0.76 -1.6
492,627 - GFF454 0.77 -1.1
492,738 + -0.2
492,774 + +0.3
492,774 + +0.1
492,775 - -0.0
492,775 - -0.9
492,775 - -0.4
492,812 + -0.5
492,812 + -1.9
492,812 + +0.1
492,812 + -2.0
492,813 - +0.4
492,813 - +1.7
492,813 - +0.0
492,813 - +0.8
492,813 - -1.3
492,813 - -0.6
492,813 - -1.3
492,820 + -0.6
492,821 - +0.6
492,911 + -0.2
493,002 + -0.5
493,003 - -0.4
493,620 + GFF455 0.74 -0.8
493,620 + GFF455 0.74 -0.1
493,620 + GFF455 0.74 +0.4
493,620 + GFF455 0.74 -0.7
493,621 - GFF455 0.74 +0.6
493,621 - GFF455 0.74 -1.4
493,621 - GFF455 0.74 -1.7
493,671 + GFF455 0.80 +0.2
493,671 + GFF455 0.80 +1.3
493,671 + GFF455 0.80 +0.5
493,672 - GFF455 0.80 +0.1
493,672 - GFF455 0.80 +0.3
493,672 - GFF455 0.80 -1.7

Or see this region's nucleotide sequence