Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4537 and GFF4538 are separated by 0 nucleotides GFF4538 and GFF4539 are separated by 21 nucleotides GFF4539 and GFF4540 are separated by 375 nucleotides
GFF4537 - Tetrapartite efflux system, inner membrane component FusBC-like, at 175,084 to 177,216
GFF4537
GFF4538 - Transcriptional regulator, MarR family, at 177,217 to 177,684
GFF4538
GFF4539 - no description, at 177,706 to 177,831
GFF4539
GFF4540 - hypothetical protein, at 178,207 to 179,388
GFF4540
Position (kb) 177
178 Strain fitness (log2 ratio) -2
-1
0
1
2 at 176.858 kb on + strand, within GFF4537 at 176.858 kb on + strand, within GFF4537 at 176.859 kb on - strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on - strand, within GFF4537 at 176.880 kb on - strand, within GFF4537 at 176.880 kb on - strand, within GFF4537 at 176.880 kb on - strand, within GFF4537 at 176.880 kb on - strand, within GFF4537 at 177.029 kb on + strand at 177.029 kb on + strand at 177.029 kb on + strand at 177.029 kb on + strand at 177.030 kb on - strand at 177.030 kb on - strand at 177.030 kb on - strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.587 kb on + strand, within GFF4538 at 177.588 kb on - strand, within GFF4538 at 177.743 kb on + strand, within GFF4539 at 177.747 kb on + strand, within GFF4539 at 177.747 kb on + strand, within GFF4539 at 177.747 kb on + strand, within GFF4539 at 177.771 kb on - strand, within GFF4539 at 177.771 kb on - strand, within GFF4539 at 177.771 kb on - strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 178.347 kb on + strand, within GFF4540 at 178.347 kb on + strand, within GFF4540 at 178.347 kb on + strand, within GFF4540 at 178.347 kb on + strand, within GFF4540 at 178.347 kb on + strand, within GFF4540 at 178.347 kb on + strand, within GFF4540 at 178.348 kb on - strand, within GFF4540 at 178.348 kb on - strand, within GFF4540 at 178.348 kb on - strand, within GFF4540 at 178.348 kb on - strand, within GFF4540 at 178.348 kb on - strand, within GFF4540 at 178.348 kb on - strand, within GFF4540 at 178.348 kb on - strand, within GFF4540 at 178.348 kb on - strand, within GFF4540 at 178.348 kb on - strand, within GFF4540 at 178.370 kb on + strand, within GFF4540 at 178.370 kb on + strand, within GFF4540 at 178.370 kb on + strand, within GFF4540 at 178.370 kb on + strand, within GFF4540 at 178.371 kb on - strand, within GFF4540 at 178.371 kb on - strand, within GFF4540 at 178.371 kb on - strand, within GFF4540 at 178.371 kb on - strand, within GFF4540 at 178.504 kb on + strand, within GFF4540 at 178.799 kb on + strand, within GFF4540 at 178.799 kb on + strand, within GFF4540 at 178.799 kb on + strand, within GFF4540 at 178.799 kb on + strand, within GFF4540 at 178.799 kb on + strand, within GFF4540 at 178.799 kb on + strand, within GFF4540 at 178.800 kb on - strand, within GFF4540 at 178.800 kb on - strand, within GFF4540 at 178.800 kb on - strand, within GFF4540 at 178.800 kb on - strand, within GFF4540
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 176,858 + GFF4537 0.83 -1.3 176,858 + GFF4537 0.83 -0.4 176,859 - GFF4537 0.83 -0.7 176,879 + GFF4537 0.84 +1.7 176,879 + GFF4537 0.84 +0.1 176,879 + GFF4537 0.84 -0.6 176,879 + GFF4537 0.84 -1.1 176,879 + GFF4537 0.84 -0.6 176,879 + GFF4537 0.84 +0.2 176,879 + GFF4537 0.84 -0.4 176,879 + GFF4537 0.84 -0.0 176,879 - GFF4537 0.84 -0.3 176,880 - GFF4537 0.84 +2.3 176,880 - GFF4537 0.84 -0.1 176,880 - GFF4537 0.84 -0.6 176,880 - GFF4537 0.84 -0.5 177,029 + +0.5 177,029 + -2.0 177,029 + +0.2 177,029 + +0.6 177,030 - +0.1 177,030 - +1.3 177,030 - +0.4 177,077 + +0.4 177,077 + +0.4 177,077 + +0.4 177,077 + -0.2 177,077 + +0.2 177,077 + +0.9 177,077 + +1.0 177,077 + -0.1 177,077 + -0.5 177,077 + -0.5 177,077 + +0.1 177,077 + -1.5 177,077 + -0.6 177,077 + +0.2 177,077 + -0.0 177,077 + -0.1 177,077 + +0.3 177,077 + +0.7 177,077 + -0.1 177,077 + -0.2 177,077 + -0.0 177,077 + -1.0 177,077 + -0.1 177,077 + -1.5 177,077 + +0.0 177,077 + +0.7 177,077 + -0.8 177,077 + -0.8 177,077 + +0.6 177,078 - -0.2 177,078 - +2.1 177,078 - -2.3 177,078 - -0.3 177,078 - -0.8 177,078 - -0.1 177,078 - -0.2 177,078 - -0.5 177,078 - +0.0 177,078 - +0.4 177,078 - -1.1 177,078 - -0.0 177,078 - -0.9 177,078 - -0.3 177,078 - -0.4 177,078 - -0.2 177,078 - +0.7 177,078 - +0.4 177,078 - -0.6 177,078 - +0.3 177,078 - -0.9 177,078 - -0.5 177,078 - +0.0 177,078 - -0.1 177,078 - -0.8 177,078 - +0.4 177,078 - -0.2 177,131 + -0.9 177,131 + -1.2 177,131 + -0.1 177,131 + +0.0 177,131 + +0.2 177,131 + -0.4 177,131 + -1.0 177,131 + -0.9 177,131 + +0.0 177,131 + +1.1 177,131 + +0.4 177,131 + -0.6 177,131 + -0.5 177,131 + +0.3 177,131 + +0.5 177,131 + -0.6 177,131 + -0.7 177,131 + -0.9 177,132 - +0.1 177,132 - -1.0 177,132 - +0.6 177,132 - +0.0 177,132 - +0.6 177,132 - -0.8 177,132 - +1.1 177,132 - -1.3 177,132 - -0.0 177,132 - +0.2 177,132 - +0.5 177,132 - +0.3 177,132 - -0.2 177,132 - -0.9 177,132 - -0.1 177,132 - +0.7 177,132 - +0.9 177,132 - +0.7 177,132 - +1.2 177,132 - -0.5 177,218 + +0.4 177,218 + -1.8 177,218 + -0.6 177,218 + -0.3 177,218 + -0.6 177,218 + -1.1 177,218 + +0.7 177,218 + -0.8 177,219 - -0.6 177,219 - +0.8 177,219 - -0.2 177,219 - -0.5 177,219 - -0.0 177,219 - +0.6 177,219 - -0.5 177,219 - -0.3 177,219 - -0.1 177,219 - -0.8 177,219 - +0.9 177,219 - +0.0 177,587 + GFF4538 0.79 +0.2 177,588 - GFF4538 0.79 +1.1 177,743 + GFF4539 0.29 -0.4 177,747 + GFF4539 0.33 -0.2 177,747 + GFF4539 0.33 -0.6 177,747 + GFF4539 0.33 -0.7 177,771 - GFF4539 0.52 -0.2 177,771 - GFF4539 0.52 -0.4 177,771 - GFF4539 0.52 -0.0 177,774 + GFF4539 0.54 +0.3 177,774 + GFF4539 0.54 -0.8 177,774 + GFF4539 0.54 +0.7 177,774 + GFF4539 0.54 +0.2 177,774 + GFF4539 0.54 +0.5 177,774 + GFF4539 0.54 +0.4 177,774 + GFF4539 0.54 +0.2 177,774 + GFF4539 0.54 +0.5 177,775 - GFF4539 0.55 -0.0 177,775 - GFF4539 0.55 -0.0 177,775 - GFF4539 0.55 +0.3 177,775 - GFF4539 0.55 -0.3 177,775 - GFF4539 0.55 -0.5 177,775 - GFF4539 0.55 +0.6 177,775 - GFF4539 0.55 +0.1 177,775 - GFF4539 0.55 -0.7 178,347 + GFF4540 0.12 +0.6 178,347 + GFF4540 0.12 +0.2 178,347 + GFF4540 0.12 +0.6 178,347 + GFF4540 0.12 +0.7 178,347 + GFF4540 0.12 +0.7 178,347 + GFF4540 0.12 -0.3 178,348 - GFF4540 0.12 -0.7 178,348 - GFF4540 0.12 +0.1 178,348 - GFF4540 0.12 -0.5 178,348 - GFF4540 0.12 -0.7 178,348 - GFF4540 0.12 -0.7 178,348 - GFF4540 0.12 -0.5 178,348 - GFF4540 0.12 +0.1 178,348 - GFF4540 0.12 -1.1 178,348 - GFF4540 0.12 +0.5 178,370 + GFF4540 0.14 +0.1 178,370 + GFF4540 0.14 -1.9 178,370 + GFF4540 0.14 -0.5 178,370 + GFF4540 0.14 -0.1 178,371 - GFF4540 0.14 -0.4 178,371 - GFF4540 0.14 +0.1 178,371 - GFF4540 0.14 -0.6 178,371 - GFF4540 0.14 -0.4 178,504 + GFF4540 0.25 -0.9 178,799 + GFF4540 0.50 -0.4 178,799 + GFF4540 0.50 -0.5 178,799 + GFF4540 0.50 +0.9 178,799 + GFF4540 0.50 -0.8 178,799 + GFF4540 0.50 -1.1 178,799 + GFF4540 0.50 +0.1 178,800 - GFF4540 0.50 -1.0 178,800 - GFF4540 0.50 -0.1 178,800 - GFF4540 0.50 -0.2 178,800 - GFF4540 0.50 -0.0
Or see this region's nucleotide sequence