Strain Fitness in Variovorax sp. SCN45 around GFF4523

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4522 and GFF4523 overlap by 4 nucleotidesGFF4523 and GFF4524 are separated by 23 nucleotides GFF4522 - Uncharacterized MFS-type transporter, at 160,923 to 162,197 GFF4522 GFF4523 - Cytosine deaminase (EC 3.5.4.1), at 162,194 to 163,408 GFF4523 GFF4524 - Uncharacterized symporter YhjB, at 163,432 to 164,907 GFF4524 Position (kb) 162 163 164Strain fitness (log2 ratio) -2 -1 0 1at 161.491 kb on + strand, within GFF4522at 161.491 kb on + strand, within GFF4522at 161.491 kb on + strand, within GFF4522at 161.491 kb on + strand, within GFF4522at 161.491 kb on + strand, within GFF4522at 161.491 kb on + strand, within GFF4522at 161.491 kb on + strand, within GFF4522at 161.491 kb on + strand, within GFF4522at 161.492 kb on - strand, within GFF4522at 161.492 kb on - strand, within GFF4522at 161.492 kb on - strand, within GFF4522at 161.492 kb on - strand, within GFF4522at 161.492 kb on - strand, within GFF4522at 161.492 kb on - strand, within GFF4522at 161.492 kb on - strand, within GFF4522at 161.492 kb on - strand, within GFF4522at 161.525 kb on - strand, within GFF4522at 161.777 kb on - strand, within GFF4522at 161.777 kb on - strand, within GFF4522at 161.809 kb on + strand, within GFF4522at 162.352 kb on - strand, within GFF4523at 162.352 kb on - strand, within GFF4523at 162.435 kb on + strand, within GFF4523at 162.435 kb on + strand, within GFF4523at 162.435 kb on + strand, within GFF4523at 162.436 kb on - strand, within GFF4523at 162.436 kb on - strand, within GFF4523at 162.436 kb on - strand, within GFF4523at 162.503 kb on + strand, within GFF4523at 162.503 kb on + strand, within GFF4523at 162.503 kb on + strand, within GFF4523at 162.662 kb on + strand, within GFF4523at 162.662 kb on + strand, within GFF4523at 162.663 kb on - strand, within GFF4523at 162.663 kb on - strand, within GFF4523at 162.812 kb on + strand, within GFF4523at 162.813 kb on - strand, within GFF4523at 163.576 kb on - strandat 163.576 kb on - strandat 163.769 kb on + strand, within GFF4524at 163.770 kb on - strand, within GFF4524at 163.860 kb on - strand, within GFF4524at 163.860 kb on - strand, within GFF4524at 164.081 kb on + strand, within GFF4524at 164.082 kb on - strand, within GFF4524at 164.082 kb on - strand, within GFF4524at 164.136 kb on - strand, within GFF4524at 164.160 kb on - strand, within GFF4524at 164.165 kb on + strand, within GFF4524at 164.165 kb on + strand, within GFF4524at 164.166 kb on - strand, within GFF4524at 164.166 kb on - strand, within GFF4524at 164.166 kb on - strand, within GFF4524at 164.166 kb on - strand, within GFF4524at 164.166 kb on - strand, within GFF4524at 164.166 kb on - strand, within GFF4524at 164.168 kb on + strand, within GFF4524at 164.169 kb on - strand, within GFF4524at 164.202 kb on - strand, within GFF4524at 164.291 kb on + strand, within GFF4524at 164.291 kb on + strand, within GFF4524at 164.292 kb on - strand, within GFF4524at 164.294 kb on + strand, within GFF4524at 164.295 kb on - strand, within GFF4524at 164.309 kb on + strand, within GFF4524at 164.309 kb on + strand, within GFF4524at 164.309 kb on + strand, within GFF4524at 164.309 kb on + strand, within GFF4524at 164.399 kb on + strand, within GFF4524at 164.399 kb on + strand, within GFF4524at 164.399 kb on + strand, within GFF4524at 164.399 kb on + strand, within GFF4524at 164.399 kb on + strand, within GFF4524at 164.400 kb on - strand, within GFF4524at 164.400 kb on - strand, within GFF4524at 164.400 kb on - strand, within GFF4524at 164.400 kb on - strand, within GFF4524at 164.400 kb on - strand, within GFF4524at 164.400 kb on - strand, within GFF4524

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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161,491 + GFF4522 0.45 +0.1
161,491 + GFF4522 0.45 -0.2
161,491 + GFF4522 0.45 -0.3
161,491 + GFF4522 0.45 -0.1
161,491 + GFF4522 0.45 -1.5
161,491 + GFF4522 0.45 -1.3
161,491 + GFF4522 0.45 -0.3
161,491 + GFF4522 0.45 -2.0
161,492 - GFF4522 0.45 +0.4
161,492 - GFF4522 0.45 -0.9
161,492 - GFF4522 0.45 -0.3
161,492 - GFF4522 0.45 -0.9
161,492 - GFF4522 0.45 +0.1
161,492 - GFF4522 0.45 +0.3
161,492 - GFF4522 0.45 -0.1
161,492 - GFF4522 0.45 -0.3
161,525 - GFF4522 0.47 +1.3
161,777 - GFF4522 0.67 -0.1
161,777 - GFF4522 0.67 +1.6
161,809 + GFF4522 0.69 -0.0
162,352 - GFF4523 0.13 -0.2
162,352 - GFF4523 0.13 +0.0
162,435 + GFF4523 0.20 -1.0
162,435 + GFF4523 0.20 +0.1
162,435 + GFF4523 0.20 -0.0
162,436 - GFF4523 0.20 +0.2
162,436 - GFF4523 0.20 -0.2
162,436 - GFF4523 0.20 +0.4
162,503 + GFF4523 0.25 +0.9
162,503 + GFF4523 0.25 +1.7
162,503 + GFF4523 0.25 +1.4
162,662 + GFF4523 0.39 +0.3
162,662 + GFF4523 0.39 -0.5
162,663 - GFF4523 0.39 -0.6
162,663 - GFF4523 0.39 +0.7
162,812 + GFF4523 0.51 -0.3
162,813 - GFF4523 0.51 +0.2
163,576 - -0.1
163,576 - -0.0
163,769 + GFF4524 0.23 -0.0
163,770 - GFF4524 0.23 +1.3
163,860 - GFF4524 0.29 -0.9
163,860 - GFF4524 0.29 +0.1
164,081 + GFF4524 0.44 +0.2
164,082 - GFF4524 0.44 -0.7
164,082 - GFF4524 0.44 -0.1
164,136 - GFF4524 0.48 +0.1
164,160 - GFF4524 0.49 -0.6
164,165 + GFF4524 0.50 +0.1
164,165 + GFF4524 0.50 -0.5
164,166 - GFF4524 0.50 -0.3
164,166 - GFF4524 0.50 -0.3
164,166 - GFF4524 0.50 -0.1
164,166 - GFF4524 0.50 +0.7
164,166 - GFF4524 0.50 -0.6
164,166 - GFF4524 0.50 +0.1
164,168 + GFF4524 0.50 -0.7
164,169 - GFF4524 0.50 +0.6
164,202 - GFF4524 0.52 +0.1
164,291 + GFF4524 0.58 -0.1
164,291 + GFF4524 0.58 -2.0
164,292 - GFF4524 0.58 -1.1
164,294 + GFF4524 0.58 -0.4
164,295 - GFF4524 0.58 -0.8
164,309 + GFF4524 0.59 -0.8
164,309 + GFF4524 0.59 +0.3
164,309 + GFF4524 0.59 -0.6
164,309 + GFF4524 0.59 -0.2
164,399 + GFF4524 0.66 +0.3
164,399 + GFF4524 0.66 -0.3
164,399 + GFF4524 0.66 -0.0
164,399 + GFF4524 0.66 -0.6
164,399 + GFF4524 0.66 -0.4
164,400 - GFF4524 0.66 -0.1
164,400 - GFF4524 0.66 -0.7
164,400 - GFF4524 0.66 +0.9
164,400 - GFF4524 0.66 +0.5
164,400 - GFF4524 0.66 -0.9
164,400 - GFF4524 0.66 +1.3

Or see this region's nucleotide sequence