Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4480 and GFF4481 are separated by 2 nucleotides GFF4481 and GFF4482 are separated by 8 nucleotides GFF4482 and GFF4483 are separated by 268 nucleotides
GFF4480 - Cell division protein FtsL, at 124,426 to 124,797
GFF4480
GFF4481 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase (EC 2.1.1.199), at 124,800 to 125,723
GFF4481
GFF4482 - Transcriptional regulator MraZ, at 125,732 to 126,166
GFF4482
GFF4483 - ATP-dependent hsl protease ATP-binding subunit HslU, at 126,435 to 127,763
GFF4483
Position (kb) 125
126
127 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 125.059 kb on - strand, within GFF4481 at 125.800 kb on - strand, within GFF4482 at 125.800 kb on - strand, within GFF4482 at 125.800 kb on - strand, within GFF4482 at 125.800 kb on - strand, within GFF4482 at 125.800 kb on - strand, within GFF4482 at 125.800 kb on - strand, within GFF4482 at 126.253 kb on - strand at 126.253 kb on - strand at 126.253 kb on - strand at 126.253 kb on - strand at 126.253 kb on - strand at 126.253 kb on - strand at 126.290 kb on + strand at 126.291 kb on - strand at 126.299 kb on + strand at 126.367 kb on - strand at 126.367 kb on - strand at 126.367 kb on - strand at 126.371 kb on - strand at 126.371 kb on - strand at 126.471 kb on + strand at 126.471 kb on + strand at 126.471 kb on + strand at 126.471 kb on + strand at 126.471 kb on + strand at 126.471 kb on + strand at 126.472 kb on - strand at 126.472 kb on - strand at 126.472 kb on - strand at 126.472 kb on - strand at 126.472 kb on - strand at 126.472 kb on - strand at 126.472 kb on - strand at 126.472 kb on - strand at 126.472 kb on - strand at 126.496 kb on + strand at 126.496 kb on + strand at 126.496 kb on + strand at 126.496 kb on + strand at 126.497 kb on - strand at 126.497 kb on - strand at 126.497 kb on - strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.703 kb on + strand, within GFF4483 at 126.703 kb on + strand, within GFF4483 at 126.703 kb on + strand, within GFF4483 at 126.703 kb on + strand, within GFF4483 at 126.703 kb on + strand, within GFF4483 at 126.703 kb on + strand, within GFF4483 at 126.703 kb on + strand, within GFF4483 at 126.704 kb on - strand, within GFF4483 at 126.704 kb on - strand, within GFF4483 at 126.704 kb on - strand, within GFF4483 at 126.704 kb on - strand, within GFF4483 at 126.704 kb on - strand, within GFF4483 at 126.704 kb on - strand, within GFF4483 at 126.886 kb on + strand, within GFF4483 at 126.886 kb on + strand, within GFF4483 at 126.886 kb on + strand, within GFF4483 at 126.887 kb on - strand, within GFF4483 at 126.887 kb on - strand, within GFF4483 at 126.887 kb on - strand, within GFF4483 at 126.887 kb on - strand, within GFF4483 at 126.887 kb on - strand, within GFF4483 at 126.887 kb on - strand, within GFF4483
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 125,059 - GFF4481 0.28 +0.1 125,800 - GFF4482 0.16 -0.4 125,800 - GFF4482 0.16 -1.4 125,800 - GFF4482 0.16 -0.9 125,800 - GFF4482 0.16 -0.2 125,800 - GFF4482 0.16 -2.4 125,800 - GFF4482 0.16 -1.1 126,253 - -0.4 126,253 - -0.5 126,253 - +0.7 126,253 - +0.4 126,253 - -0.4 126,253 - +0.1 126,290 + +1.3 126,291 - -0.1 126,299 + -0.8 126,367 - -2.3 126,367 - -1.1 126,367 - -1.1 126,371 - -0.9 126,371 - -0.8 126,471 + -1.0 126,471 + -0.9 126,471 + -0.3 126,471 + +0.3 126,471 + -0.5 126,471 + +1.0 126,472 - -0.4 126,472 - -1.2 126,472 - +0.0 126,472 - -0.3 126,472 - +0.3 126,472 - -0.9 126,472 - -0.3 126,472 - +1.4 126,472 - -0.3 126,496 + -1.1 126,496 + -1.4 126,496 + -0.4 126,496 + -0.3 126,497 - -0.6 126,497 - -0.7 126,497 - -0.6 126,549 + +0.7 126,549 + -1.1 126,549 + +2.0 126,549 + +0.4 126,549 + -0.4 126,549 + +0.2 126,549 + +0.9 126,549 + -1.6 126,549 + +0.3 126,549 + +0.4 126,549 + -0.6 126,549 + -0.6 126,549 + +0.1 126,549 + +1.4 126,549 + -0.7 126,549 + +1.1 126,549 + -0.5 126,549 + -0.3 126,549 + +2.3 126,549 + -0.2 126,549 + +0.4 126,549 + -0.6 126,550 - -1.4 126,550 - -0.8 126,550 - +0.4 126,550 - -0.1 126,550 - -0.4 126,550 - +0.0 126,550 - -0.7 126,550 - -0.9 126,550 - -2.9 126,550 - -0.1 126,550 - -0.7 126,703 + GFF4483 0.20 -1.6 126,703 + GFF4483 0.20 -0.2 126,703 + GFF4483 0.20 -1.2 126,703 + GFF4483 0.20 -0.5 126,703 + GFF4483 0.20 -0.1 126,703 + GFF4483 0.20 -0.5 126,703 + GFF4483 0.20 +0.6 126,704 - GFF4483 0.20 -1.9 126,704 - GFF4483 0.20 -0.5 126,704 - GFF4483 0.20 -0.8 126,704 - GFF4483 0.20 -0.8 126,704 - GFF4483 0.20 -0.8 126,704 - GFF4483 0.20 -0.5 126,886 + GFF4483 0.34 -0.7 126,886 + GFF4483 0.34 +0.5 126,886 + GFF4483 0.34 +1.7 126,887 - GFF4483 0.34 +0.2 126,887 - GFF4483 0.34 -0.2 126,887 - GFF4483 0.34 -0.4 126,887 - GFF4483 0.34 -1.3 126,887 - GFF4483 0.34 -1.1 126,887 - GFF4483 0.34 -0.9
Or see this region's nucleotide sequence