Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4463 and GFF4464 are separated by 0 nucleotides GFF4464 and GFF4465 are separated by 48 nucleotides GFF4465 and GFF4466 are separated by 15 nucleotides GFF4466 and GFF4467 are separated by 27 nucleotides
GFF4463 - alpha-methyl-L-serine aldolase, at 104,266 to 105,534
GFF4463
GFF4464 - hypothetical protein, at 105,535 to 105,660
GFF4464
GFF4465 - Transcriptional regulator, LysR family, at 105,709 to 106,665
GFF4465
GFF4466 - Uncharacterized protein Ajs_3662, at 106,681 to 106,857
GFF4466
GFF4467 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108), at 106,885 to 107,817
GFF4467
Position (kb) 105
106
107 Strain fitness (log2 ratio) -1
0
1
2 at 104.828 kb on + strand, within GFF4463 at 104.828 kb on + strand, within GFF4463 at 104.828 kb on + strand, within GFF4463 at 104.828 kb on + strand, within GFF4463 at 104.829 kb on - strand, within GFF4463 at 104.829 kb on - strand, within GFF4463 at 104.829 kb on - strand, within GFF4463 at 105.062 kb on + strand, within GFF4463 at 105.206 kb on + strand, within GFF4463 at 105.206 kb on + strand, within GFF4463 at 105.207 kb on - strand, within GFF4463 at 105.207 kb on - strand, within GFF4463 at 105.326 kb on + strand, within GFF4463 at 105.326 kb on + strand, within GFF4463 at 105.327 kb on - strand, within GFF4463 at 105.327 kb on - strand, within GFF4463 at 105.327 kb on - strand, within GFF4463 at 105.903 kb on - strand, within GFF4465 at 105.903 kb on - strand, within GFF4465 at 105.903 kb on - strand, within GFF4465 at 105.903 kb on - strand, within GFF4465 at 106.175 kb on - strand, within GFF4465 at 106.453 kb on + strand, within GFF4465 at 106.453 kb on + strand, within GFF4465 at 106.682 kb on + strand at 106.682 kb on + strand at 106.682 kb on + strand at 106.769 kb on + strand, within GFF4466 at 106.770 kb on - strand, within GFF4466 at 106.793 kb on + strand, within GFF4466 at 106.794 kb on - strand, within GFF4466 at 106.794 kb on - strand, within GFF4466 at 106.794 kb on - strand, within GFF4466 at 106.887 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 104,828 + GFF4463 0.44 -0.7 104,828 + GFF4463 0.44 -0.0 104,828 + GFF4463 0.44 +0.7 104,828 + GFF4463 0.44 +0.2 104,829 - GFF4463 0.44 +0.4 104,829 - GFF4463 0.44 -0.1 104,829 - GFF4463 0.44 -0.3 105,062 + GFF4463 0.63 +0.4 105,206 + GFF4463 0.74 +0.1 105,206 + GFF4463 0.74 -0.8 105,207 - GFF4463 0.74 -0.4 105,207 - GFF4463 0.74 -0.2 105,326 + GFF4463 0.84 +0.3 105,326 + GFF4463 0.84 -0.7 105,327 - GFF4463 0.84 -0.6 105,327 - GFF4463 0.84 +2.1 105,327 - GFF4463 0.84 +0.3 105,903 - GFF4465 0.20 -0.5 105,903 - GFF4465 0.20 +0.8 105,903 - GFF4465 0.20 +0.5 105,903 - GFF4465 0.20 -1.5 106,175 - GFF4465 0.49 -0.2 106,453 + GFF4465 0.78 -0.1 106,453 + GFF4465 0.78 +0.4 106,682 + +0.9 106,682 + -0.5 106,682 + +0.2 106,769 + GFF4466 0.50 +0.4 106,770 - GFF4466 0.50 +0.1 106,793 + GFF4466 0.63 +0.4 106,794 - GFF4466 0.64 -0.2 106,794 - GFF4466 0.64 +0.4 106,794 - GFF4466 0.64 +0.2 106,887 - +0.5
Or see this region's nucleotide sequence