Strain Fitness in Variovorax sp. SCN45 around GFF4459

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4457 and GFF4458 overlap by 35 nucleotidesGFF4458 and GFF4459 are separated by 21 nucleotidesGFF4459 and GFF4460 are separated by 15 nucleotides GFF4457 - Monofunctional biosynthetic peptidoglycan transglycosylase, at 98,467 to 99,210 GFF4457 GFF4458 - hypothetical protein, at 99,176 to 99,580 GFF4458 GFF4459 - Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 99,602 to 100,465 GFF4459 GFF4460 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 100,481 to 101,470 GFF4460 Position (kb) 99 100 101Strain fitness (log2 ratio) -2 -1 0 1at 98.656 kb on + strand, within GFF4457at 98.656 kb on + strand, within GFF4457at 98.990 kb on - strand, within GFF4457at 99.046 kb on + strand, within GFF4457at 99.046 kb on + strand, within GFF4457at 99.046 kb on + strand, within GFF4457at 99.047 kb on - strand, within GFF4457at 99.049 kb on + strand, within GFF4457at 99.050 kb on - strand, within GFF4457at 99.120 kb on + strand, within GFF4457at 99.151 kb on + strandat 99.261 kb on + strand, within GFF4458at 99.261 kb on + strand, within GFF4458at 99.261 kb on + strand, within GFF4458at 99.262 kb on - strand, within GFF4458at 99.262 kb on - strand, within GFF4458at 99.351 kb on + strand, within GFF4458at 99.351 kb on + strand, within GFF4458at 99.351 kb on + strand, within GFF4458at 99.352 kb on - strand, within GFF4458at 99.352 kb on - strand, within GFF4458at 99.441 kb on + strand, within GFF4458at 99.441 kb on + strand, within GFF4458at 99.441 kb on + strand, within GFF4458at 99.442 kb on - strand, within GFF4458at 99.442 kb on - strand, within GFF4458at 99.442 kb on - strand, within GFF4458at 99.442 kb on - strand, within GFF4458at 99.442 kb on - strand, within GFF4458at 99.442 kb on - strand, within GFF4458at 99.442 kb on - strand, within GFF4458at 99.442 kb on - strand, within GFF4458at 99.587 kb on + strandat 99.588 kb on - strandat 99.601 kb on + strandat 99.601 kb on + strandat 99.601 kb on + strandat 99.602 kb on - strandat 99.602 kb on - strandat 99.602 kb on - strandat 99.674 kb on + strandat 99.674 kb on + strandat 99.674 kb on + strandat 99.675 kb on - strandat 99.675 kb on - strandat 99.707 kb on + strand, within GFF4459at 99.707 kb on + strand, within GFF4459at 99.708 kb on - strand, within GFF4459at 99.708 kb on - strand, within GFF4459at 99.708 kb on - strand, within GFF4459at 99.708 kb on - strand, within GFF4459at 99.863 kb on + strand, within GFF4459at 100.256 kb on + strand, within GFF4459at 100.284 kb on + strand, within GFF4459at 100.284 kb on + strand, within GFF4459at 100.284 kb on + strand, within GFF4459at 100.285 kb on - strand, within GFF4459at 100.285 kb on - strand, within GFF4459at 100.898 kb on + strand, within GFF4460at 100.899 kb on - strand, within GFF4460at 100.899 kb on - strand, within GFF4460at 100.899 kb on - strand, within GFF4460at 100.899 kb on - strand, within GFF4460at 101.000 kb on + strand, within GFF4460at 101.001 kb on - strand, within GFF4460at 101.457 kb on - strandat 101.457 kb on - strandat 101.457 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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98,656 + GFF4457 0.25 -1.5
98,656 + GFF4457 0.25 +1.4
98,990 - GFF4457 0.70 -1.3
99,046 + GFF4457 0.78 -0.2
99,046 + GFF4457 0.78 +0.3
99,046 + GFF4457 0.78 -0.3
99,047 - GFF4457 0.78 -1.4
99,049 + GFF4457 0.78 -0.5
99,050 - GFF4457 0.78 +0.0
99,120 + GFF4457 0.88 -1.7
99,151 + +1.4
99,261 + GFF4458 0.21 -0.3
99,261 + GFF4458 0.21 +0.3
99,261 + GFF4458 0.21 -0.8
99,262 - GFF4458 0.21 -0.1
99,262 - GFF4458 0.21 -0.5
99,351 + GFF4458 0.43 -0.0
99,351 + GFF4458 0.43 -0.6
99,351 + GFF4458 0.43 -0.2
99,352 - GFF4458 0.43 -0.5
99,352 - GFF4458 0.43 +0.1
99,441 + GFF4458 0.65 -0.6
99,441 + GFF4458 0.65 +0.2
99,441 + GFF4458 0.65 -0.1
99,442 - GFF4458 0.66 -0.6
99,442 - GFF4458 0.66 -0.6
99,442 - GFF4458 0.66 -0.6
99,442 - GFF4458 0.66 -0.1
99,442 - GFF4458 0.66 -0.2
99,442 - GFF4458 0.66 +0.4
99,442 - GFF4458 0.66 -0.6
99,442 - GFF4458 0.66 -0.9
99,587 + -0.3
99,588 - -2.4
99,601 + -0.7
99,601 + +0.1
99,601 + -0.2
99,602 - -1.7
99,602 - -0.4
99,602 - +0.4
99,674 + +0.6
99,674 + +0.4
99,674 + -1.3
99,675 - -0.6
99,675 - +0.0
99,707 + GFF4459 0.12 +0.6
99,707 + GFF4459 0.12 +0.1
99,708 - GFF4459 0.12 -0.1
99,708 - GFF4459 0.12 +0.5
99,708 - GFF4459 0.12 +0.4
99,708 - GFF4459 0.12 -0.1
99,863 + GFF4459 0.30 -0.2
100,256 + GFF4459 0.76 -0.1
100,284 + GFF4459 0.79 -0.6
100,284 + GFF4459 0.79 +0.3
100,284 + GFF4459 0.79 -0.6
100,285 - GFF4459 0.79 +0.5
100,285 - GFF4459 0.79 -0.0
100,898 + GFF4460 0.42 -0.4
100,899 - GFF4460 0.42 +0.3
100,899 - GFF4460 0.42 +1.3
100,899 - GFF4460 0.42 +0.1
100,899 - GFF4460 0.42 -0.3
101,000 + GFF4460 0.52 +0.1
101,001 - GFF4460 0.53 -0.1
101,457 - -0.7
101,457 - +1.0
101,457 - -0.2

Or see this region's nucleotide sequence