Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4223 and GFF4225 are separated by 83 nucleotides GFF4225 and GFF4224 overlap by 2 nucleotides GFF4224 and GFF4226 are separated by 54 nucleotides GFF4226 and GFF4227 are separated by 6 nucleotides
GFF4223 - BUG/TctC family periplasmic protein, at 135,802 to 136,788
GFF4223
GFF4225 - no description, at 136,872 to 137,039
GFF4225
GFF4224 - Transcriptional regulator, AcrR family, at 137,038 to 137,670
GFF4224
GFF4226 - Acryloyl-CoA reductase AcuI/YhdH (EC 1.3.1.84), at 137,725 to 138,714
GFF4226
GFF4227 - Thiamine pyrophosphate-requiring enzymes, at 138,721 to 140,361
GFF4227
Position (kb) 137
138
139 Strain fitness (log2 ratio) -1
0
1
2 at 136.772 kb on + strand at 136.773 kb on - strand at 136.773 kb on - strand at 136.831 kb on + strand at 137.090 kb on - strand at 137.090 kb on - strand at 137.209 kb on + strand, within GFF4224 at 137.209 kb on + strand, within GFF4224 at 137.209 kb on + strand, within GFF4224 at 137.209 kb on + strand, within GFF4224 at 137.213 kb on - strand, within GFF4224 at 137.215 kb on + strand, within GFF4224 at 137.216 kb on - strand, within GFF4224 at 137.216 kb on - strand, within GFF4224 at 137.260 kb on + strand, within GFF4224 at 137.269 kb on + strand, within GFF4224 at 137.438 kb on - strand, within GFF4224 at 137.833 kb on + strand, within GFF4226 at 137.833 kb on + strand, within GFF4226 at 137.833 kb on + strand, within GFF4226 at 137.834 kb on - strand, within GFF4226 at 137.848 kb on + strand, within GFF4226 at 138.155 kb on + strand, within GFF4226 at 138.155 kb on + strand, within GFF4226 at 138.156 kb on - strand, within GFF4226 at 138.156 kb on - strand, within GFF4226 at 138.156 kb on - strand, within GFF4226 at 138.283 kb on + strand, within GFF4226 at 138.283 kb on + strand, within GFF4226 at 138.284 kb on - strand, within GFF4226 at 139.618 kb on + strand, within GFF4227 at 139.618 kb on + strand, within GFF4227 at 139.618 kb on + strand, within GFF4227 at 139.619 kb on - strand, within GFF4227 at 139.619 kb on - strand, within GFF4227
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 136,772 + -0.6 136,773 - +0.1 136,773 - -1.5 136,831 + +0.6 137,090 - +1.2 137,090 - -0.1 137,209 + GFF4224 0.27 +0.8 137,209 + GFF4224 0.27 -1.1 137,209 + GFF4224 0.27 -0.3 137,209 + GFF4224 0.27 -0.5 137,213 - GFF4224 0.28 +0.0 137,215 + GFF4224 0.28 +0.1 137,216 - GFF4224 0.28 -1.4 137,216 - GFF4224 0.28 -0.9 137,260 + GFF4224 0.35 -0.4 137,269 + GFF4224 0.36 -0.6 137,438 - GFF4224 0.63 -0.2 137,833 + GFF4226 0.11 -1.5 137,833 + GFF4226 0.11 -0.1 137,833 + GFF4226 0.11 +0.6 137,834 - GFF4226 0.11 -1.5 137,848 + GFF4226 0.12 -0.1 138,155 + GFF4226 0.43 -1.2 138,155 + GFF4226 0.43 -0.8 138,156 - GFF4226 0.44 -1.0 138,156 - GFF4226 0.44 -0.1 138,156 - GFF4226 0.44 -0.6 138,283 + GFF4226 0.56 -0.1 138,283 + GFF4226 0.56 +0.5 138,284 - GFF4226 0.56 -0.7 139,618 + GFF4227 0.55 -0.4 139,618 + GFF4227 0.55 +1.9 139,618 + GFF4227 0.55 -0.3 139,619 - GFF4227 0.55 +0.5 139,619 - GFF4227 0.55 -0.1
Or see this region's nucleotide sequence