Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4201 and GFF4202 overlap by 4 nucleotides GFF4202 and GFF4203 are separated by 1 nucleotides GFF4203 and GFF4204 overlap by 4 nucleotides GFF4204 and GFF4205 overlap by 4 nucleotides
GFF4201 - Acyl-CoA dehydrogenase, at 116,502 to 117,614
GFF4201
GFF4202 - Enoyl-CoA hydratase (EC 4.2.1.17), at 117,611 to 118,372
GFF4202
GFF4203 - Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative, at 118,374 to 120,509
GFF4203
GFF4204 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 120,506 to 121,264
GFF4204
GFF4205 - hypothetical protein, at 121,261 to 121,641
GFF4205
Position (kb) 118
119
120
121 Strain fitness (log2 ratio) -1
0
1 at 118.109 kb on + strand, within GFF4202 at 118.109 kb on + strand, within GFF4202 at 118.110 kb on - strand, within GFF4202 at 118.358 kb on + strand at 118.358 kb on + strand at 118.358 kb on + strand at 118.497 kb on + strand at 118.498 kb on - strand at 118.498 kb on - strand at 118.498 kb on - strand at 118.503 kb on + strand at 119.197 kb on + strand, within GFF4203 at 119.197 kb on + strand, within GFF4203 at 121.041 kb on + strand, within GFF4204 at 121.041 kb on + strand, within GFF4204 at 121.042 kb on - strand, within GFF4204 at 121.042 kb on - strand, within GFF4204 at 121.042 kb on - strand, within GFF4204
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 118,109 + GFF4202 0.65 +0.7 118,109 + GFF4202 0.65 -0.2 118,110 - GFF4202 0.65 -0.8 118,358 + -1.0 118,358 + +0.8 118,358 + +0.5 118,497 + -0.4 118,498 - +0.4 118,498 - -0.7 118,498 - +0.5 118,503 + -0.7 119,197 + GFF4203 0.39 -1.4 119,197 + GFF4203 0.39 -0.8 121,041 + GFF4204 0.70 +0.3 121,041 + GFF4204 0.70 -0.9 121,042 - GFF4204 0.71 +0.7 121,042 - GFF4204 0.71 -0.4 121,042 - GFF4204 0.71 -0.7
Or see this region's nucleotide sequence