Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4150 and GFF4151 are separated by 68 nucleotides GFF4151 and GFF4152 are separated by 2 nucleotides
GFF4150 - Salicylate hydroxylase (EC 1.14.13.1), at 56,448 to 57,704
GFF4150
GFF4151 - RidA/YER057c/UK114 superfamily, group 1, at 57,773 to 58,405
GFF4151
GFF4152 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 58,408 to 59,574
GFF4152
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.963 kb on - strand, within GFF4150 at 57.424 kb on - strand, within GFF4150 at 57.424 kb on - strand, within GFF4150 at 57.471 kb on + strand, within GFF4150 at 57.684 kb on + strand at 57.684 kb on + strand at 57.814 kb on - strand at 57.962 kb on + strand, within GFF4151 at 57.963 kb on - strand, within GFF4151 at 57.963 kb on - strand, within GFF4151 at 57.995 kb on + strand, within GFF4151 at 57.995 kb on + strand, within GFF4151 at 58.166 kb on + strand, within GFF4151 at 58.167 kb on - strand, within GFF4151 at 58.167 kb on - strand, within GFF4151 at 58.184 kb on + strand, within GFF4151 at 58.185 kb on - strand, within GFF4151 at 58.185 kb on - strand, within GFF4151 at 58.241 kb on + strand, within GFF4151 at 58.645 kb on + strand, within GFF4152 at 58.786 kb on + strand, within GFF4152 at 58.787 kb on - strand, within GFF4152 at 58.787 kb on - strand, within GFF4152 at 58.834 kb on + strand, within GFF4152 at 58.834 kb on + strand, within GFF4152 at 58.835 kb on - strand, within GFF4152 at 58.835 kb on - strand, within GFF4152 at 59.014 kb on + strand, within GFF4152 at 59.089 kb on + strand, within GFF4152 at 59.089 kb on + strand, within GFF4152 at 59.105 kb on - strand, within GFF4152 at 59.195 kb on - strand, within GFF4152 at 59.195 kb on - strand, within GFF4152
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 56,963 - GFF4150 0.41 +1.6 57,424 - GFF4150 0.78 -0.1 57,424 - GFF4150 0.78 +0.9 57,471 + GFF4150 0.81 +0.3 57,684 + +0.5 57,684 + +0.8 57,814 - -1.4 57,962 + GFF4151 0.30 -1.1 57,963 - GFF4151 0.30 -0.8 57,963 - GFF4151 0.30 -0.8 57,995 + GFF4151 0.35 -0.1 57,995 + GFF4151 0.35 -0.7 58,166 + GFF4151 0.62 -2.3 58,167 - GFF4151 0.62 -0.5 58,167 - GFF4151 0.62 +0.9 58,184 + GFF4151 0.65 +2.6 58,185 - GFF4151 0.65 -0.8 58,185 - GFF4151 0.65 -0.8 58,241 + GFF4151 0.74 -0.2 58,645 + GFF4152 0.20 -0.3 58,786 + GFF4152 0.32 -0.4 58,787 - GFF4152 0.32 +1.1 58,787 - GFF4152 0.32 +1.6 58,834 + GFF4152 0.37 +1.3 58,834 + GFF4152 0.37 -2.2 58,835 - GFF4152 0.37 -0.6 58,835 - GFF4152 0.37 +1.5 59,014 + GFF4152 0.52 -2.3 59,089 + GFF4152 0.58 -0.5 59,089 + GFF4152 0.58 -0.8 59,105 - GFF4152 0.60 +0.3 59,195 - GFF4152 0.67 -0.7 59,195 - GFF4152 0.67 -0.2
Or see this region's nucleotide sequence